Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20430 103 / 2e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024443 [exp] 311 / 6e-108 AT3G20430 198 / 6e-63 unknown protein Lus10007452 [exp] 264 / 4e-89 AT3G20430 190 / 1e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232800 [exp] 124 / 2e-34 AT3G20430 193 / 5e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10258 [flax] [poplar] RNA_GG_bind PHAX RNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10000887 pacid=23150244 polypeptide=Lus10000887 locus=Lus10000887.g ID=Lus10000887.BGIv1.0 annot-version=v1.0 ATGGAAGACGAAGCCAATATCCTGGACTCCATACTAGGCGATGAAGGCGAAGACGTCGATATGGTCGACGTTGAAGAAGGCGAGTTGCTCGAACAAACTG ATGCTAGCCAGACTTGCGGTGTGACTGGCAATGGCGGAGACGGAGTTTCTAAAACAACTGACGATCATCCAACTACGAAAAAGAAAAGGCGTAATAGGAA GAGGAAGAAGCCAGCCGGTGCTCTGCGCCTGCCCGTAAGCATTGACAGACGTTTTAACATTGTAGTTATCAATGCTGAATCATGCAATTTTCAGGTGGGT GCTATTCAGTCATGTGGAGGACAGATGACTTCAGATGGAAAACGTTCTCGAACCGGTGGTGGAATTTTATGGAACATCTTAAAGACGAGAGAGCCTTCAG CATACAAAGAAATAATGAAGAAAGCAACTGAGTTTGAGAAACAATTCAAGCAACAAAAGCCAATGAGACCAGCTGCTGCCAAGAACACAGTAGGTGTGTC CAATGAAACTGCACGGGCCGGCACTAATGCTGCTCCAAATGATTTGTCGAATGGAACTGCACATGCAATCACCAATGAGACTACAAATGTTAGCAGGCTT GTGGTCGAAAGCCAGCTCGAGAAGGACAACGTTGAAACAAAGCGCAGGTCTGTTCATGATAGGATTAGAGTGCCGTTTCGTACGAGGATCTGA
AA sequence Show only first row Show all	>Lus10000887 pacid=23150244 polypeptide=Lus10000887 locus=Lus10000887.g ID=Lus10000887.BGIv1.0 annot-version=v1.0 MEDEANILDSILGDEGEDVDMVDVEEGELLEQTDASQTCGVTGNGGDGVSKTTDDHPTTKKKRRNRKRKKPAGALRLPVSIDRRFNIVVINAESCNFQVG AIQSCGGQMTSDGKRSRTGGGILWNILKTREPSAYKEIMKKATEFEKQFKQQKPMRPAAAKNTVGVSNETARAGTNAAPNDLSNGTAHAITNETTNVSRL VVESQLEKDNVETKRRSVHDRIRVPFRTRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20430			unknown protein		Lus10000887 [exp]	0	1
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10039888 [exp]	7.3	0.8697
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	18.2	0.8553
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	39.8	0.8454
AT3G51010			unknown protein		Lus10042347 [exp]	43.4	0.8426
AT5G41685			Mitochondrial outer membrane t...		Lus10000059 [exp]	48.7	0.8127
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	48.9	0.8410
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	49.3	0.8449
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10033402 [exp]	49.6	0.7954
AT1G60640			unknown protein		Lus10033578 [exp]	53.7	0.8255
AT1G71350			eukaryotic translation initiat...		Lus10041458 [exp]	75.4	0.7959

Compare expression of checked genes

Lus10000887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.