Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47010 320 / 4e-105 unknown protein AT1G17030 275 / 3e-87 unknown protein AT2G25950 188 / 1e-57 Protein of unknown function (DUF1000) (.1) AT4G09965 90 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007453 [exp] 425 / 6e-146 AT2G47010 653 / 0.0 unknown protein Lus10009978 [exp] 348 / 2e-115 AT2G47010 647 / 0.0 unknown protein Lus10024442 [exp] 279 / 4e-92 AT1G17030 231 / 4e-73 unknown protein Lus10007454 [exp] 209 / 3e-65 AT2G25950 341 / 2e-120 Protein of unknown function (DUF1000) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187700 [exp] 361 / 6e-121 AT2G47010 690 / 0.0 unknown protein Potri.019G076900 [exp] 320 / 3e-104 AT2G47010 587 / 0.0 unknown protein Potri.004G062000 [exp] 308 / 2e-100 AT1G17030 648 / 0.0 unknown protein Potri.001G381600 [exp] 299 / 6e-97 AT1G17030 698 / 0.0 unknown protein Potri.001G381400 [exp] 295 / 2e-95 AT1G17030 706 / 0.0 unknown protein Potri.018G056100 [exp] 189 / 5e-58 AT2G25950 366 / 5e-131 Protein of unknown function (DUF1000) (.1) Potri.001G382000 [exp] 88 / 5e-19 AT1G17030 389 / 1e-133 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF06201 [flax] [poplar] PITH PITH domain
Representative CDS sequence Show only first row Show all	>Lus10000888 pacid=23150240 polypeptide=Lus10000888 locus=Lus10000888.g ID=Lus10000888.BGIv1.0 annot-version=v1.0 ATGAGGGTGTTTATCAATCGAGAAGGAATTGACTTCTCCGATGCTCAGGACATGCAAGCTATTCAGGAGTGGGAGTTGGCCGAAAATCTGCAAGGAGTGC TAGAGTACCAAACCAGATATGCCAAATTTCAGTGTGTTTCAAGCATCACGTTACACTTCCCTGAGAACTTCGGAGGTGATCCTACTCAGATACACTACAT AGGATTCAAAGGTGAAGTAACTAAGAATAAGAGGGATGCTGTCGCAACGATTGTGTACGAACTGATGCCAAATCCTTCAGACCATAAGACAAAGGCTGAA ACAGGTGGAGGGGAAAAGGTAAACTATGACTCATCATCAGCGGTGGGTGATCCTGGAATGAAAAGAGATGGGCTCAGAGTGGCCTTTGAAGCTTGGAACT TCTACAATGAAGTTGGCCACCAAAAAGCTCATGGAATGGGCAGTCCCAAAGCTTCTGATTGCTTCGACTTCATCAATAATCCAGCACTAGTGGACCATAA GGCCAAAGAAGCTAATAACAAGCTTGGAATTGGAGACCAATTTCCCGGGCTTCCACCACAAGCACTCCACATTCCAGACCTATACGCCGTCCACAAAGAG CTCTACCTTGGATCCCTCTATCAGCTACCAGAGTCACCAAACTTCAAGGTGAGGCTGACGTTGGACATCAAACAAGGAGGGGGAGCAAAGAGCCAGTTCT ACTTGATCGACATCGGTAGCTGCTGGAAGAACGACGGATCTCCATGCGACGGGGATGTACTAACCGACGTAACTCGTTACTCGGAGATGATAATAAACCC AGAAACCCAGCCCTGGTGCACTCTTACAAACCCTTCCCGATGTCCACCTTTCCACATTACTCCAAAGGACACCAAGCTGTACAGAAACGACACTGCAAAC TTCCCCTATGCAGCATACCACCTTTATAGCGCTCCAGGGAACGCCAAGTATCTCGAGCAACCAGTCAACATTTGTGATCCTTACAACAATACTCAGGCTC AGGAGTTGCTTCAGTTGCTGCCTCATCCCATTTGGGGAGACTATGGCTACCCGACGAAACCAGGGCAAGGTTGGACTGGTGACTCCAAGAAGAGCTGGGA GCTACATGTTGGTACCTTGTCGAGCCGCCTCTACTTTTACCAGGATCCAGGGAGTCCATCTGCAAGAAGAATTTGGACGTCCATAGATGTAGGGACTGAA ATCTATGTGAGCGATGAAGAAGAGGTTGCAGACTGGACTCTAAGCGACTTCGATGTCATTCTCACGGGCCAGACACAAAAAGAGGATGGCGCAAGAACTG AAATTCATGCGTTGTGA
AA sequence Show only first row Show all	>Lus10000888 pacid=23150240 polypeptide=Lus10000888 locus=Lus10000888.g ID=Lus10000888.BGIv1.0 annot-version=v1.0 MRVFINREGIDFSDAQDMQAIQEWELAENLQGVLEYQTRYAKFQCVSSITLHFPENFGGDPTQIHYIGFKGEVTKNKRDAVATIVYELMPNPSDHKTKAE TGGGEKVNYDSSSAVGDPGMKRDGLRVAFEAWNFYNEVGHQKAHGMGSPKASDCFDFINNPALVDHKAKEANNKLGIGDQFPGLPPQALHIPDLYAVHKE LYLGSLYQLPESPNFKVRLTLDIKQGGGAKSQFYLIDIGSCWKNDGSPCDGDVLTDVTRYSEMIINPETQPWCTLTNPSRCPPFHITPKDTKLYRNDTAN FPYAAYHLYSAPGNAKYLEQPVNICDPYNNTQAQELLQLLPHPIWGDYGYPTKPGQGWTGDSKKSWELHVGTLSSRLYFYQDPGSPSARRIWTSIDVGTE IYVSDEEEVADWTLSDFDVILTGQTQKEDGARTEIHAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47010			unknown protein		Lus10000888 [exp]	0	1
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	4.6	0.8990
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	5.1	0.8977
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	12.5	0.8945
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	12.7	0.8967
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	13.6	0.8903
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	16.5	0.8766
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	17.5	0.8883
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	19.6	0.8913
					Lus10039025 [exp]	23.0	0.8834
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	25.7	0.8580

Compare expression of checked genes

Lus10000888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.