Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12180 879 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 874 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G23650 722 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT3G20410 676 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G50700 676 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT4G04720 674 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 664 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT5G04870 639 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 637 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT1G61950 635 / 0 CPK19 calcium-dependent protein kinase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036050 [exp] 998 / 0 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10038460 [exp] 910 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10023346 [exp] 770 / 0 AT5G12180 780 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10017537 [exp] 733 / 0 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10021531 [exp] 678 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 673 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 659 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 648 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10006777 [exp] 639 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069200 [exp] 893 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G274700 [exp] 888 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 730 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 729 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.004G015500 [exp] 667 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 667 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.010G244800 [exp] 640 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G200600 [exp] 637 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G207300 [exp] 637 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 633 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10000889 pacid=23165398 polypeptide=Lus10000889 locus=Lus10000889.g ID=Lus10000889.BGIv1.0 annot-version=v1.0 ATGGGGAATTGTTGCTCTAGGGGCAACGAAGGAGATGAAGCCTCCAACGATGGAAAGGGAGAAGACGCACAACAACAGGGAGGAGGTAGTAGTAATCCAG GATCATCCAAGATGGCCCCACCTGCTTCTCCTGGGCCATCCAAGCCTTCCAAAAATTCCCCCATCGGCCCCGTCCTAGGGAGGCCGATGGAGGACATCAA GTCAACCTACTCCGTCGGCAAGGAATTGGGTCGGGGCCAGTTCGGGGTCACACATTTGTGCACCCACAAGGCGAGCGGGGAGCAATTCGCATGCAAGACC ATAGCCAAGAGGAAGCTGGTCAACAAGGAGGATTTGGACGATGTGCGCCGAGAGGTTCAGATCATGCACCACTTGACCGGTCAGCTGAACATCGTGGAGC TCAAAGGTGCTTTCGAGGACAAGCACTCGGTGCATTTGGTGATGGAGTTGTGTGCCGGTGGAGAGCTCTTCGATCGTATCATTGCGAAAGGTCACTATAG CGAGCGAGCTGCGGCTTCTTTGCTTAGAACCATTGTTCAGATTGTGCACACTTGCCATTCCATGGGGGTCATTCATAGAGATCTTAAACCTGAGAACTTC TTGCTCCTTAATAAAGACGAGAGTTCTCCCCTTAAGGCTACAGATTTCGGGCTTTCTGTGTTCTACAAGCCCGGAGAAGTGTTCAAGGACATCGTCGGAA GTGCATACTACATTGCGCCGGAAGTGTTGAAACGGAAGTATGGCCCGGAAGCTGATATTTGGAGTATTGGAGTTATGTTGTACATTCTGTTATCAGGCGT TCCTCCTTTCTGGGCAGAATCCGAGCATGGCATTTTCAACGCGATTTTACGTGGACATTGTGATTTTACAAGTGATCCATGGCCGTCGATTTCACCTCAA GCCAAGGATCTTGTACGAAAGATGCTCAACTCAGATCCTAAACAAAGGTTAACGGCTTCTCAAGTTCTAAATCATCCATGGATCAAGGAAGATGGAGAAG CACCAGATGTTCCTCTTGACAATGCTGTATTGGGTAGACTAAAACAATTCAAAGCAATGAACAAGTTCAAGAAAGTTGCTCTAAGGGTTATTGCTGGATG CTTGTCGGAGGAAGAAATCATGGGACTAAAGGAGATGTTCAAAGGAATGGACACAGACAACAGTGGAACAATCACACTCGAGGAACTAAAGCTTGGGCTT GCTAAGCAAGGAACTAAGCTTACCGAAGCTGAAGTTAAACAATTGATGGAAGCAGCGGATGCAGATGGAAATGGAACCATTGACTACGAGGAGTTCATCA CGGCCACAATGCATATGAACAAGATGGATAGAGACGAGCATCTTTACACAGCTTTCCAACATTTCGACAAAGATAATAGCGGGTACATAACAACAGAAGA GCTTCAACAAGCCCTAAGGAGCTTTGGTATAAATGATGATAACGAGCTCAAAGATATTCTCTCTGAAGTTGACAGCGATCACGATGACAGAATAAACTAC GATGAATTTGTTGCAATGATGAAAAAAGGAAACCCTGAAGCCAATCCAAAAAAACGACGCGACACCGTATTTGTCTGA
AA sequence Show only first row Show all	>Lus10000889 pacid=23165398 polypeptide=Lus10000889 locus=Lus10000889.g ID=Lus10000889.BGIv1.0 annot-version=v1.0 MGNCCSRGNEGDEASNDGKGEDAQQQGGGSSNPGSSKMAPPASPGPSKPSKNSPIGPVLGRPMEDIKSTYSVGKELGRGQFGVTHLCTHKASGEQFACKT IAKRKLVNKEDLDDVRREVQIMHHLTGQLNIVELKGAFEDKHSVHLVMELCAGGELFDRIIAKGHYSERAAASLLRTIVQIVHTCHSMGVIHRDLKPENF LLLNKDESSPLKATDFGLSVFYKPGEVFKDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYILLSGVPPFWAESEHGIFNAILRGHCDFTSDPWPSISPQ AKDLVRKMLNSDPKQRLTASQVLNHPWIKEDGEAPDVPLDNAVLGRLKQFKAMNKFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITLEELKLGL AKQGTKLTEAEVKQLMEAADADGNGTIDYEEFITATMHMNKMDRDEHLYTAFQHFDKDNSGYITTEELQQALRSFGINDDNELKDILSEVDSDHDDRINY DEFVAMMKKGNPEANPKKRRDTVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	1.0	1.0000
					Lus10001326 [exp]	2.0	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	2.4	1.0000
					Lus10026755 [exp]	2.8	1.0000
					Lus10014857 [exp]	3.2	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	3.5	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	3.7	1.0000
					Lus10009206 [exp]	4.0	1.0000
					Lus10016593 [exp]	4.2	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	4.5	1.0000

Compare expression of checked genes

Lus10000889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.