Plant FIBer expression Database

Lus10000891 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12170 300 / 3e-96 CLT3 CRT (chloroquine-resistance transporter)-like transporter 3 (.2)
AT5G19380 289 / 3e-92 CLT1 CRT (chloroquine-resistance transporter)-like transporter 1 (.1), CRT (chloroquine-resistance transporter)-like transporter 1 (.2)
AT4G24460 196 / 1e-56 CLT2 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028858
[exp]
216 / 2e-65 AT4G24460 326 / 5e-110 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2)
Lus10008964
[exp]
194 / 1e-55 AT4G24460 291 / 8e-94 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G069400
[exp]
333 / 2e-109 AT5G19380 422 / 4e-145 CRT (chloroquine-resistance transporter)-like transporter 1 (.1), CRT (chloroquine-resistance transporter)-like transporter 1 (.2)
PFAM info
Representative CDS sequence
>Lus10000891 pacid=23165400 polypeptide=Lus10000891 locus=Lus10000891.g ID=Lus10000891.BGIv1.0 annot-version=v1.0
ATGACGTCATTTTGCCGGCGGGTGTGTGCNNNNNNNNNNNNNNCCCGCGGCTTCGCCGCCTCCTCAGCCCCGGCATATTTCCTCCGTCGCCGCCACTCTC
GCTCCTCGGCGACAGTGGAAGTCGTCTCCCTTCCTGAGAGACGAATTCGTAACTATCAGCTGCAACGCGGAATTTCGCTGAGAGCAGCCTCGAGACATTC
CAAATTGTTCATCGTCCATACAGCGGTCGGTGGCCACAGCGATGTGAGGGAACGATCGGACGGAGGAAGCGAGCCGGACAACTCGTCGGTTTCTCTCTCC
GAGTCTGTCGATGCGGTTGAGAGGAGTGAATACAGAGATCTGGGCGACGACGTGGCGGAGGCGGTGGATGACAAGAGGATTGCGAGTTCGAGCGGGGAGA
ATCGGTCTGTGGAGGTTGCGATTGCAGCTGCAGCGACGGTGGTGCTAGGGGTGGGGAACCGGGTGTTGTATAAGCTGGCTCTGGTTCCTCTCAAGCAGTA
CCCCTTCTTTCTCGCTCAGCTCGCTACTTTCGGGTATGTCCTTGTGTACTTTTCGATATTGCATTTCCGGCACCAAGCTGGAATCATCACCAATGAGATG
CTTTCGCTGCCAAAAGGTCCCTTTGTTCTTGTTGGAATATTGGAGGCTCTTGGAGCTGCTGCTGGGATGGCAGCAGGAGGTAACAGATGCGATCACTTCT
CTCCTTCCTGTTGCATTGCTTCCTTGTATGTTAAGCAGATAAATAACATGTCGTTTAAGGAGGTGATTTTATTGGGAACGGTTTGCACTTCAGAATTTGC
AGATCTGTTTCTTATGGTTGATGTACTCTTGATTGGTTTGGATTTTGGATGCTCATCTTCTTGCTATTCACCTCCAAAGTTTGCAAACCTCTCCGGAGCA
TCCATTCCAGTTTTATCTCAGACCTTCCTCGTGTGGCAGATTCTTATGTCATTTGTCTTCCTAGGAAGGAGATACAAAGTCAATCAGTTGATGGGATGTT
TTCTTGTTGCTGTTGGAGTGATTATAACGGTAGCCAGTGGATCTAGTGCTGGTAATTCGCTGAAACCAGCTGCTATCTTTTGGAGTCTTTTAATGATCTT
GTCGTTTCTGTTTCAAGCTGCGGATACAGTACTCAAGGGAGGGTCACTAGATATTTTTGTTGTGAACTCCTTTGGATCTGCATACCAAGCATTATTCATC
TGCCTACTTGTGCCGTTTATGTCTAAGTTGTGGGGAATACCATTCAGTCAGCTTCCAAGCTATCTTAAAGATGGGGCAGCTTGCTTTCTAAACATCGGTA
CTTTGTCAAGTGGATGTGAAGGTGCACCAGTTCTACCTCTGCTGTTCATTCTCGTAAACATGGGGTTCAACATATCGTTGCTGCACTTGCTCAAGATTTC
TTCTGCTGTTGTGTCCTCCCTTGCTTCCACATTTTCGGTGCCGATAGCGGTATACACGTTCACACTTCCACTGCCTTATATTGGAGTAGCATCCACCCTT
CCAAAGGGATTTGTTGGAGGAGCCATCATCTTGGTTTTAGGGTTGCTCGTATATTCTTGGACCCCCGGTGCTCGTCAGACCACTCAGCCTCCCTCAGCAC
CTTCTTCTACTACTAGCAGCTGA
AA sequence
>Lus10000891 pacid=23165400 polypeptide=Lus10000891 locus=Lus10000891.g ID=Lus10000891.BGIv1.0 annot-version=v1.0
MTSFCRRVCXXXXXXRGFAASSAPAYFLRRRHSRSSATVEVVSLPERRIRNYQLQRGISLRAASRHSKLFIVHTAVGGHSDVRERSDGGSEPDNSSVSLS
ESVDAVERSEYRDLGDDVAEAVDDKRIASSSGENRSVEVAIAAAATVVLGVGNRVLYKLALVPLKQYPFFLAQLATFGYVLVYFSILHFRHQAGIITNEM
LSLPKGPFVLVGILEALGAAAGMAAGGNRCDHFSPSCCIASLYVKQINNMSFKEVILLGTVCTSEFADLFLMVDVLLIGLDFGCSSSCYSPPKFANLSGA
SIPVLSQTFLVWQILMSFVFLGRRYKVNQLMGCFLVAVGVIITVASGSSAGNSLKPAAIFWSLLMILSFLFQAADTVLKGGSLDIFVVNSFGSAYQALFI
CLLVPFMSKLWGIPFSQLPSYLKDGAACFLNIGTLSSGCEGAPVLPLLFILVNMGFNISLLHLLKISSAVVSSLASTFSVPIAVYTFTLPLPYIGVASTL
PKGFVGGAIILVLGLLVYSWTPGARQTTQPPSAPSSTTSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G12170 CLT3 CRT (chloroquine-resistance tr... Lus10000891
[exp]
0 1
AT2G19940 oxidoreductases, acting on the... Lus10034096
[exp]
6.5 0.7203
AT5G17280 unknown protein Lus10028356
[exp]
11.3 0.7296
AT4G24240 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1... Lus10010053
[exp]
13.4 0.7150
AT1G49320 ATUSPL1 unknown seed protein like 1 (.... Lus10040475
[exp]
16.0 0.7141
AT1G18720 Protein of unknown function (D... Lus10030447
[exp]
21.4 0.7210
AT5G55090 MAPKKK15 mitogen-activated protein kina... Lus10021551
[exp]
26.3 0.6952
AT5G18930 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmet... Lus10021951
[exp]
26.3 0.6787
AT1G31130 unknown protein Lus10018940
[exp]
32.7 0.7064
AT1G07630 PLL5 pol-like 5 (.1) Lus10016555
[exp]
33.1 0.7110
AT2G15220 Plant basic secretory protein ... Lus10001360
[exp]
33.9 0.7030

Lus10000891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.