Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46870 213 / 3e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09320 78 / 3e-16 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1) AT1G13040 55 / 1e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G27750 54 / 1e-08 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT3G42570 52 / 3e-08 peroxidase family protein (.1) AT5G18475 52 / 8e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 52 / 1e-07 GUN1 genomes uncoupled 1 (.1) AT5G48730 49 / 1e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 48 / 4e-06 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036049 [exp] 471 / 3e-171 AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040756 [exp] 209 / 1e-67 AT3G46870 349 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016476 [exp] 206 / 2e-66 AT3G46870 346 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011646 [exp] 52 / 2e-07 AT1G13040 503 / 1e-175 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10011849 [exp] 52 / 2e-07 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 49 / 1e-06 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036129 [exp] 49 / 2e-06 AT1G13040 573 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037592 [exp] 49 / 2e-06 AT1G51965 792 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10017041 [exp] 49 / 2e-06 AT2G36240 436 / 4e-151 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275000 [exp] 368 / 2e-130 AT1G62350 274 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G038200 [exp] 206 / 3e-66 AT3G46870 326 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G134300 [exp] 101 / 9e-26 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.009G169600 [exp] 80 / 6e-18 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.004G149400 [exp] 54 / 2e-08 AT2G15980 477 / 4e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 54 / 3e-08 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G090400 [exp] 53 / 7e-08 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 49 / 1e-06 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G127500 [exp] 49 / 1e-06 AT2G01390 635 / 0.0 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 49 / 1e-06 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000892 pacid=23165397 polypeptide=Lus10000892 locus=Lus10000892.g ID=Lus10000892.BGIv1.0 annot-version=v1.0 ATGTCGCGTTTGATGTCGAATTTCGTTCTCCTACTCCGCAACTCCTCGTCGGCTCCGCGACTCCTGCTGGCTGAAAACTTCTCTAATTTGGCTTCCAGGA CAAGGCCGAGCTTGTCGATATGGAGGCGGAAGAAAGAGATGGGGAAAGAAGGCCTTTTTGCTGCGAAGGAGCTGAAACGTCTCCAATCAAATCCCTCGCG CCTCGACCGTTTCATCCATTCCCACGTCTCTCGCCTACTCAAGTCTGATCTCGTAGCTGTGCTAGCTGAGTTCCAGCGCCAAGATCAGGTCTTCCTCTGC ATGAAGTTATATGACGTGATACGCAAAGAGATATGGTATAAGCCGGACATGTTCTTTTACAGGGACATGCTTATGATGCTTGCAAGGAACAGGAAAGTTG ATGAAGCAGAAAAAGTTTGGCGAGATTTGAAGAGAGAGCAAGTTTTGTTCGATCAGCATACATTCGGAGACATCATGAGAGCCTTTCTGGACAATGGTTT GCCAGCTGAAGCGATGCAGATATATGAGGAAATGAGACAGTCACCTGATCCACCACTGTCTCTGCCCTTCCGAGTGATCTTGAAAGGGCTAATTCCGTAT CCGGAGTTAAGGGAGAAAGTGAAAGATGATTTCTTGGAGCTTTTTCCTAGCATGATTGTCTACGATCCAGCTGAGGATCTGTTTGACGATGAAGAATCTC AAAGGGAAAGCGACTATGATTGA
AA sequence Show only first row Show all	>Lus10000892 pacid=23165397 polypeptide=Lus10000892 locus=Lus10000892.g ID=Lus10000892.BGIv1.0 annot-version=v1.0 MSRLMSNFVLLLRNSSSAPRLLLAENFSNLASRTRPSLSIWRRKKEMGKEGLFAAKELKRLQSNPSRLDRFIHSHVSRLLKSDLVAVLAEFQRQDQVFLC MKLYDVIRKEIWYKPDMFFYRDMLMMLARNRKVDEAEKVWRDLKREQVLFDQHTFGDIMRAFLDNGLPAEAMQIYEEMRQSPDPPLSLPFRVILKGLIPY PELREKVKDDFLELFPSMIVYDPAEDLFDDEESQRESDYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	0	1
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10000431 [exp]	2.0	0.8034
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	4.0	0.8329
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	6.3	0.8318
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	8.1	0.8141
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	8.2	0.7588
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	9.0	0.7861
					Lus10033943 [exp]	9.2	0.7909
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	10.5	0.7839
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	10.6	0.7883
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	12.8	0.7989

Compare expression of checked genes

Lus10000892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.