Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33811 488 / 1e-173 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 346 / 4e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 341 / 4e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 341 / 5e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 325 / 1e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 309 / 4e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 301 / 4e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 293 / 4e-97 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 286 / 3e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 259 / 3e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011998 [exp] 356 / 6e-122 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 353 / 2e-120 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 350 / 2e-119 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 343 / 1e-116 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 326 / 6e-110 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 325 / 8e-110 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 317 / 5e-106 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10039152 [exp] 284 / 2e-93 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015842 [exp] 278 / 3e-91 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102400 [exp] 516 / 0 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 355 / 1e-121 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 352 / 3e-120 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 317 / 2e-106 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 311 / 2e-104 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008402 [exp] 310 / 7e-104 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 310 / 8e-104 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 304 / 2e-101 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 304 / 2e-101 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 301 / 1e-100 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10000893 pacid=23165401 polypeptide=Lus10000893 locus=Lus10000893.g ID=Lus10000893.BGIv1.0 annot-version=v1.0 ATGGGAGGGGAGGCTCAAGTGGTGCAACCAGAAGCCCAAGTTCCATGTTTCTTCATTTTTGGTGATTCCTTAGTGGACAATGGGAACAACAACGGGATGC TGACGCTGGCCAGGGCCAACTACAGGCCTTACGGCATCGACTTCCCGTTGGGTCCCACTGGCCGATTCACCAACGGCCAGACTTACGTCGACGCTCTCGC CCGTCTTCTCGGCTTCCAAGCCTTCATTCCACCATTCTCCCGAGCAAGAGGCCGCGAATTGTTGAGGGGAGTCAATTTCGCCTCCGGTGCTGCTGGCATC CGTGACGAAACCGGCAACAATTTGGGAGATCATGCGTCGATGAACCAACAAATAATAAATTTCGGGAGGACCGTGGAGTTCATGCAAAGGTACTTCAGAG GGGACACTTCCCTTCTAAAATCGTACCTTGGTCATTGCATCTACTTCTCCGGAATGGGAAGTAACGACTACCTCAACAACTATTTCATGTCGACTTTCTA CACCACTTCCTCCGATTACACCCCTAAGGCCTTCGCTTCCATCCTCCTCAAAGACTATGCCAACCAACTTGCCAAACTATACAGCATGGGAGCAAGGAAG GTGATTGTGACGTCGGTAGGCCAAATCGGATGCATCCCATACCAACTAGCTAGATATACCAACAACAATAACACCAGCAGCAGAAACAACATTACCAACA AGAATAGTAGGTGCAATGAGAACATAAACAAAGCCATCTCCATCTTCAACACAGGACTCCGGAAGCTAGTCCAGCGGTTCAACGGCGGTGCGGAACTTCC CGGAGCCAAGTTCGTCTTCCTTGACTTCTACAAGAGCACCAGCGACTTATATCTTAACTCCACCGCTTATGGGTTTGAAGTGGTAGACAAAGGGTGTTGT GGAGTTGGGAGGAACAACGGGCAAATAACATGTCTGCCGTTGCAGCAGGCTTGCCAGGATCGTCGAAAGTACTTGTTCTGGGATGCATTCCATCCCACGG AAGTTGCAAATGTGATGTTCGCTCAATCCTCTTTCTCTACCAACTCCTTCACTTATCCCATCAACATTCAACAGCTGGCTATGTCCTGA
AA sequence Show only first row Show all	>Lus10000893 pacid=23165401 polypeptide=Lus10000893 locus=Lus10000893.g ID=Lus10000893.BGIv1.0 annot-version=v1.0 MGGEAQVVQPEAQVPCFFIFGDSLVDNGNNNGMLTLARANYRPYGIDFPLGPTGRFTNGQTYVDALARLLGFQAFIPPFSRARGRELLRGVNFASGAAGI RDETGNNLGDHASMNQQIINFGRTVEFMQRYFRGDTSLLKSYLGHCIYFSGMGSNDYLNNYFMSTFYTTSSDYTPKAFASILLKDYANQLAKLYSMGARK VIVTSVGQIGCIPYQLARYTNNNNTSSRNNITNKNSRCNENINKAISIFNTGLRKLVQRFNGGAELPGAKFVFLDFYKSTSDLYLNSTAYGFEVVDKGCC GVGRNNGQITCLPLQQACQDRRKYLFWDAFHPTEVANVMFAQSSFSTNSFTYPINIQQLAMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10000893 [exp]	0	1
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	3.2	0.8463
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10017495 [exp]	3.9	0.8166
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	6.3	0.8218
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10005248 [exp]	7.2	0.8308
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	14.3	0.8111
					Lus10031379 [exp]	15.9	0.8480
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	20.2	0.8196
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	21.5	0.7942
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10026684 [exp]	28.4	0.7797
AT1G23965			unknown protein		Lus10030844 [exp]	30.4	0.8192

Compare expression of checked genes

Lus10000893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.