Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31970 529 / 0 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 286 / 5e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 281 / 5e-90 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 246 / 5e-75 DEAD box RNA helicase family protein (.1.2) AT3G01540 241 / 2e-73 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 238 / 8e-70 DEAD box RNA helicase family protein (.1) AT3G58570 214 / 4e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 214 / 4e-63 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT2G42520 212 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 211 / 5e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004552 [exp] 648 / 0 AT1G31970 572 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 285 / 6e-90 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 281 / 1e-88 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037646 [exp] 277 / 4e-88 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 276 / 7e-88 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032135 [exp] 250 / 3e-76 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 248 / 1e-75 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 250 / 2e-75 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 243 / 2e-71 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098800 [exp] 588 / 0 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 276 / 5e-88 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 278 / 2e-87 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 275 / 4e-86 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 247 / 3e-74 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 245 / 1e-73 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 241 / 1e-70 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G003600 [exp] 213 / 7e-61 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 204 / 2e-59 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G257400 [exp] 207 / 6e-59 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10000894 pacid=23159145 polypeptide=Lus10000894 locus=Lus10000894.g ID=Lus10000894.BGIv1.0 annot-version=v1.0 ATGGGCAAAAAATTGCAAGAAGAACCCACGCAAGTTGATGAGAGTATGAGGTTGGAGAAGAAGAAGAATAAGAAGCAGCAGAAAAAAGCGGCAGAAGTCG AGGAACAACTGAATGCTAAGCGAAAACTCGAAGACGCCAACACCGAACAAGGAAGCAGAAAGAAGGGTAAAAAGGAGAAGAAAAAGAATAGGGAGGAATT AAACGAGACAGAGATCAACGTAGCTGATGAAGCGACTGCTAAACAAGGGACCGACAAAGACAAAATCGTGATTTTTGTTGTCTTGCGCGATGCTGGGGAA CCAACAGGCATAAGATCACTGTGTGTGTATGGAGGAACACCTAAAGGGCCTCAAATTTCTTCCTTAAAGTCTGGTGTGGACATTGTTATTGGAACCCCTG GTCGTCTGAGAGATCTGATGGAAATGGATGTCTGCCATCTTAAAGAAGTATCTTTCGTGGTTCTGGATGAAGCAGACAGAATGCTGGATATGGGATTCAG ACAAGAAGTGCAGGCTATACTGAGCACTACAGCTTCTGCTAGGCAGATGATAATGTTCAGTGCTACGTGGCCACTTGATGTTCATAAACTAGCTGAGGAG CACATGGACCCAAATCCAGTTAAGGTGGTTGTAGGTTCTGAAGACACAGCTGCCAACCATGACGTCATGCAGATTGTTGAGGTTGTGGATGACAGGCTAC GTGATGACCGATTGCTTGCATTGCTAGAAAAATATCACAAGACCCAGAAGAACAGAGTGCTTGTATTTGCGTTGTATCAAAAGGAAGCTGAACGCCTTGA GGGAATGTTAAGGAGGAGTGGCTGGAAGGTTGTTGGTATACATGGAAACAAAGCACAAGCGCAGCGAACCAACGCACTGTCTTTATTTAAGACAGGAAGC TGCCCTTTGATGGTGGCTACTGATGTGGCAGCTAGAGGCCTAGACGTTCCAGATGTTGAGGTTGTGATTAATTATAGTTTCCCCCTAACAACGGAGGATT ACGTGCATAGAATAGGGAGGACTGGGCGTGCTGGAAAGAAGGGTGTAGCTCACACCTTTTTCACACACCACAATAAGGGACTTGCTGGGGAGCTCGTGAA TGTGCTACGAGAAGCGAAGCAGATAATACCGGAATCCCTATTGAAGTTTGGTACTCATGTGAAGAAAAAGGAATCAAAGCTATATGGTGCACACTTCAGA GAATTGGCTGCGGATGCACCCAAAGCTAAGAAGATAACATTTAACTCGGATGATGAAGATTGA
AA sequence Show only first row Show all	>Lus10000894 pacid=23159145 polypeptide=Lus10000894 locus=Lus10000894.g ID=Lus10000894.BGIv1.0 annot-version=v1.0 MGKKLQEEPTQVDESMRLEKKKNKKQQKKAAEVEEQLNAKRKLEDANTEQGSRKKGKKEKKKNREELNETEINVADEATAKQGTDKDKIVIFVVLRDAGE PTGIRSLCVYGGTPKGPQISSLKSGVDIVIGTPGRLRDLMEMDVCHLKEVSFVVLDEADRMLDMGFRQEVQAILSTTASARQMIMFSATWPLDVHKLAEE HMDPNPVKVVVGSEDTAANHDVMQIVEVVDDRLRDDRLLALLEKYHKTQKNRVLVFALYQKEAERLEGMLRRSGWKVVGIHGNKAQAQRTNALSLFKTGS CPLMVATDVAARGLDVPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTHHNKGLAGELVNVLREAKQIIPESLLKFGTHVKKKESKLYGAHFR ELAADAPKAKKITFNSDDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	0	1
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	1.0	0.9715
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035403 [exp]	1.7	0.9146
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	4.2	0.9075
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	4.5	0.9162
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	5.7	0.8931
AT5G45760			Transducin/WD40 repeat-like su...		Lus10029246 [exp]	5.7	0.9136
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	6.1	0.8795
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	6.9	0.8987
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	7.4	0.8999
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	9.5	0.9013

Compare expression of checked genes

Lus10000894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.