Plant FIBer expression Database

Lus10000895 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35360 78 / 9e-18 ubiquitin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004553
[exp]
249 / 9e-85 AT2G35360 185 / 3e-59 ubiquitin family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G089400
[exp]
109 / 1e-29 AT2G35360 266 / 6e-91 ubiquitin family protein (.1)
PFAM info
Representative CDS sequence
>Lus10000895 pacid=23159148 polypeptide=Lus10000895 locus=Lus10000895.g ID=Lus10000895.BGIv1.0 annot-version=v1.0
ATGAATTTTGGAGGAGATCCAAGAACAAATAGGTACTTCATTCATCCTCGGTTACCCATGGTAGAGATTGTTGAAGGCGGCGGCGTCGTCAATCGCTATT
ACACGACCGGAGAAGACAACGATAGTGTAACGAAGAAGAAAGCAAAGGAAACAAATATGGTGGAGATCACTCTCAAAACAATTGGCCCTTCTCCCCCTTC
TCGCATCATTCTTCCTTCTTCCATCACGGTGCGTGACTTGAGAAAGTTTATTGCTGAAAAGAAACATCTACCAATTGAAAATGTGAGATTAGTCTTGCAT
GGGAAGATGTTGGAAGACTGTGGAGAAGATGATATGCTCATCAAGCTGAAAAATAATGATTCATTGATTGTGGCTGTCAAACCAAAAGCTCCTGCCAAGC
ATCTCCAGGATGGATGTGAGGATGACGACGATCTGTGGGCTGTTATTATTCTGTGGTTCATTTTGGCACCTGTTGCTAATAGATGGCATATTGGTCCTTT
ATATGAGTGGTTTAAGCTGCTGCTGCTAAGAAGTGATCGAGTCTCAAAGAAGGCAGTCGTCGGTAGAGCTGAGTTTTTGTTATAG
AA sequence
>Lus10000895 pacid=23159148 polypeptide=Lus10000895 locus=Lus10000895.g ID=Lus10000895.BGIv1.0 annot-version=v1.0
MNFGGDPRTNRYFIHPRLPMVEIVEGGGVVNRYYTTGEDNDSVTKKKAKETNMVEITLKTIGPSPPSRIILPSSITVRDLRKFIAEKKHLPIENVRLVLH
GKMLEDCGEDDMLIKLKNNDSLIVAVKPKAPAKHLQDGCEDDDDLWAVIILWFILAPVANRWHIGPLYEWFKLLLLRSDRVSKKAVVGRAEFLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35360 ubiquitin family protein (.1) Lus10000895
[exp]
0 1
AT3G05940 Protein of unknown function (D... Lus10001058
[exp]
12.2 0.8077
AT1G49710 ATFUT12, FUCTB,... fucosyltransferase 12 (.1) Lus10019855
[exp]
22.5 0.7882
AT5G42670 Agenet domain-containing prote... Lus10011444
[exp]
31.2 0.7409
AT1G36730 Translation initiation factor ... Lus10000448
[exp]
46.9 0.7570
AT3G58600 Adaptin ear-binding coat-assoc... Lus10000617
[exp]
62.6 0.7472
AT1G68570 Major facilitator superfamily ... Lus10018838
[exp]
68.5 0.7260
AT3G06860 ATMFP2, ATMPF2,... multifunctional protein 2 (.1) Lus10037495
[exp]
70.5 0.7060
AT1G11190 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional n... Lus10018452
[exp]
71.3 0.7354
AT4G19110 Protein kinase superfamily pro... Lus10033278
[exp]
72.8 0.7611
AT3G05940 Protein of unknown function (D... Lus10001426
[exp]
84.7 0.7535

Lus10000895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.