Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35350 509 / 1e-170 PLL1 poltergeist like 1 (.1) AT2G46920 499 / 1e-165 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT1G07630 348 / 5e-110 PLL5 pol-like 5 (.1) AT2G28890 345 / 1e-108 PLL4 poltergeist like 4 (.1) AT5G02400 342 / 1e-107 PLL2 pol-like 2 (.1) AT3G09400 330 / 4e-103 PLL3 pol-like 3 (.1.2) AT3G16560 207 / 4e-59 Protein phosphatase 2C family protein (.1) AT5G66080 149 / 5e-39 Protein phosphatase 2C family protein (.1) AT3G12620 147 / 2e-38 Protein phosphatase 2C family protein (.1.2) AT3G51370 144 / 3e-38 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004554 [exp] 1363 / 0 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10025348 [exp] 347 / 7e-110 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 346 / 2e-109 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 348 / 8e-109 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 345 / 5e-108 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10004793 [exp] 214 / 5e-61 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 211 / 3e-60 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10027825 [exp] 152 / 7e-40 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 149 / 9e-39 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089500 [exp] 937 / 0 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 925 / 0 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 493 / 1e-162 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 491 / 8e-162 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.009G030600 [exp] 368 / 7e-117 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 363 / 9e-115 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.006G085000 [exp] 338 / 1e-105 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.003G159600 [exp] 204 / 2e-57 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 199 / 1e-55 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 195 / 4e-54 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10000896 pacid=23159141 polypeptide=Lus10000896 locus=Lus10000896.g ID=Lus10000896.BGIv1.0 annot-version=v1.0 ATGGGAAGTGGTCTCTCCTCCCTCTTCCCTTGTCTTAAAACGCCGCACGGTCATCACGCTTCGCACGACTCTCCCAGGACTGTGGTCCAGCTCGACAGTA TTTACGACGATGCCACTGATGCCGCCGCTGCAGCTGGAGGACTCAAGTGCAGCAGCAGCACTACTAGCGGCATCTTCCATGCCCATGGCTTCGAGAGCAC AGCGTCCTTCTGCGCCTTGCCTCTGCAGCCAGTGCCACGTGGAGGCGAGGGCTTCTTCCTCTCCGGTCCAATCGAACGCGGGGCATTGTCCGGCCCGCTC GATGCCAACTCCACCGTCGCGGGAGAGAGCGCCGGCGGGATTCACTTCTCGGCCCCGCTCGGCGGCTTGTATGCGAAAAAGAGGAGGAGAAGAGGGATCA TGCGGTTTAAGAAGGCGGTATACCGCAACCTGTCGGAAAAGAAGCTGCCTTGGGTAGTTCCCGTGTTGAATTTTGTAAACCGCAGAGACAATTCTGCAGG TGGGGAGGAAAGCGAAAGCAAATACGAGAACAACGTGCAATGGGCTCTAGGCAAGGCTGGAGAGGACCGGGTGCATGTGGTTGTATCGGAGGAGCAAGGA TGGTTGTTTGTTGGGATTTACGATGGGTTTAACGGCCCTGATGCTCCTGAATTCTTGATGGGGAATCTGTATAGGGCTGTGTATCACGAGCTTCAAGGCT TGTTTTGGGATGTTGAAGAGTCTGGAGAAATGATTAGTCTAGAGCAGAGTGAAGGTAGAATCGACAGATCGAGGAATGATGCTGGTAAGAATCGTTGTGG GAGTCTTAATGGTAGTTCTGAATGTAGCGTAGTAGTACCTCAGGGTCAGGACACTGTTGCTCGAGCTAACTCATTTTCAGGAATCCGTGGTGAAACTAAC CGTGATATTTTAGATTGTGAAATTGGATCAAGCAATGCGGCTCGAACTTACATATCAAAGGAAATATGCATTGAAAGAGAAAGTGATGGTTTGAATGGTG GAAGTGAACAGGTCATGGTGCACCAAGATAGAGTAAAACGAGTCACATTTCAATCAGATGGAATCGAGATTCCTCAAAGGAGGCGGTTGTGGGAGTTACT TGCCAATGAGGACCTTGAGGATGGAGTTGATCTTTCTGGGTCAGAAAGATTTGCCTTTTCTGTGGATGATGCTATTAGTGTAGGGAATGCAGGGTCGGCA GCAAGTAGAAGGTGGTTACTACTGTCGAAATTGAAGCAAGGGTTCTCAAAGCATAGAGAAAGGAAGTCTTTTCCTTGGAAATTTGGATTGGAGGGCAAGG AGGAGAAAGTAGAAGTGGAGATAGCTAGAATGGAAGAGCATAGGGTTGTGAAGAGGATGCGAAAAGATGGGCCAGTGGACCATGACTTGGTTTTGGGAGC ATTGTCTCGTGCATTAGATGCAACGGAGCTTGCATACTTGGAAATGACAGACAAGGTGCTAGGTACAAACCCGGAGTTGGCATTGATGGGCTCGTGTTTA TTGGTTGTTCTAATGAGGGATGAGGACGTATATGTAATGAATGTGGGTGATAGTAGGGCGATTGTGGCTCAGAATGAGCCTCAAGAGGTTGCTTCTAGTG CCATCGATGATGGTCCAATCACAGAGGGGATTGTTGAAGGTCCTGATCAGGCAATGAGCTTGACTGCGTTGCAGTTGTCCACCGACCACAGCACAAGTGT TGAAGAGGAAATACTAAGGATAAAGAATGAACATCCAGATGACAACCAATGCATTGTCAACGATAGAGTGAAAGGTCGTCTTAAGGTCACCAGAGCATTT GGAGCCGGATTTCTAAAACAGCCGAAGTTGAATGCTCCATTGTTGGAAATGTTTCGGAATGACTATATAGGCACTGCACCTTACATATCCTGCATCCCTT CACTTCGTCATCATCATCTTTGTCCAAGAGATCAATTCTTAGTCCTATCTTCAGATGGCCTATATCAGTATCTCACAAATCAAGAAGTGGTTTCTTTGGT CGAAAATTTCATGGAGAAGTATCCAGACGGAGACCCTGCACAGAGTTTGATAGAGGAACTTCTTTCTCGTGCAGCCAAGAAAGCAGGGATGGATTTTCAT GAGTTACTGGACATCCCACAAGGAGATCGTCGAAAGTACCACGATGATGTTACAGTGATGGTGATCTCGCTAGAAGGACGAATTTGGAAATCATCAGGAA AATACCTCTAA
AA sequence Show only first row Show all	>Lus10000896 pacid=23159141 polypeptide=Lus10000896 locus=Lus10000896.g ID=Lus10000896.BGIv1.0 annot-version=v1.0 MGSGLSSLFPCLKTPHGHHASHDSPRTVVQLDSIYDDATDAAAAAGGLKCSSSTTSGIFHAHGFESTASFCALPLQPVPRGGEGFFLSGPIERGALSGPL DANSTVAGESAGGIHFSAPLGGLYAKKRRRRGIMRFKKAVYRNLSEKKLPWVVPVLNFVNRRDNSAGGEESESKYENNVQWALGKAGEDRVHVVVSEEQG WLFVGIYDGFNGPDAPEFLMGNLYRAVYHELQGLFWDVEESGEMISLEQSEGRIDRSRNDAGKNRCGSLNGSSECSVVVPQGQDTVARANSFSGIRGETN RDILDCEIGSSNAARTYISKEICIERESDGLNGGSEQVMVHQDRVKRVTFQSDGIEIPQRRRLWELLANEDLEDGVDLSGSERFAFSVDDAISVGNAGSA ASRRWLLLSKLKQGFSKHRERKSFPWKFGLEGKEEKVEVEIARMEEHRVVKRMRKDGPVDHDLVLGALSRALDATELAYLEMTDKVLGTNPELALMGSCL LVVLMRDEDVYVMNVGDSRAIVAQNEPQEVASSAIDDGPITEGIVEGPDQAMSLTALQLSTDHSTSVEEEILRIKNEHPDDNQCIVNDRVKGRLKVTRAF GAGFLKQPKLNAPLLEMFRNDYIGTAPYISCIPSLRHHHLCPRDQFLVLSSDGLYQYLTNQEVVSLVENFMEKYPDGDPAQSLIEELLSRAAKKAGMDFH ELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10000896 [exp]	0	1
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	1.4	0.9486
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	4.2	0.9140
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	4.9	0.9173
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	5.3	0.9219
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	9.9	0.9276
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	12.0	0.9110
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	14.7	0.9200
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10015928 [exp]	15.5	0.8971
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	16.7	0.9146
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	17.3	0.9259

Compare expression of checked genes

Lus10000896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.