Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46580 941 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16390 443 / 5e-146 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT1G18900 184 / 1e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 178 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39980 160 / 4e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 149 / 5e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 146 / 5e-36 GUN1 genomes uncoupled 1 (.1) AT1G74850 144 / 2e-35 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G18940 143 / 4e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06580 135 / 2e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004555 [exp] 1388 / 0 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 422 / 4e-138 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038788 [exp] 417 / 5e-136 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033110 [exp] 167 / 8e-43 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10013894 [exp] 154 / 1e-38 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 153 / 2e-38 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 147 / 2e-36 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10034342 [exp] 145 / 3e-36 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041429 [exp] 145 / 5e-36 AT5G39980 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089600 [exp] 985 / 0 AT5G46580 986 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G019000 [exp] 457 / 3e-151 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G006800 [exp] 456 / 4e-151 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G018600 [exp] 394 / 1e-127 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G066400 [exp] 169 / 2e-43 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.002G193900 [exp] 155 / 3e-39 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.017G075700 [exp] 153 / 1e-38 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 146 / 4e-36 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G118500 [exp] 142 / 9e-35 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 138 / 1e-33 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000897 pacid=23159151 polypeptide=Lus10000897 locus=Lus10000897.g ID=Lus10000897.BGIv1.0 annot-version=v1.0 ATGGCTGCCACACTATCAGCTGCTGCAGCCATGGACGTTCACTTCACCACTCACCAATCTGACGGAAACCGAACATTCTTCTTCTCTTCTGCTTCTTCTT CTTCTTCGAAGAACTCCTGCCTCCCTTTCTCTTTTGCCCGAAATAGTATTTTCCTCTGCCGCCGCCAAATTTCCATCACTGCCTCCGCCACTGAATCCCC TAATGATTCAAAGAACCAATCACTATCCGAGCAGCTCAAGCCCCTTTCCACCGCCACTCTCTCCGCCGGCCCCGACCACCGCGAAGCCCAGCTCACAACC ACAAGGCCAAAATCCGTTTGGGTAAATCCGGCAAAACCAAGAAGGTCGGTTCTCTCCCTTCACCGCCATAAGAGGTCCCCTTACCAGCACAATCCAAAAG TGGACCAGCACAATCAAAAAGTGGAAGAATTGAGGCTTTTCGCTCGGAAGCTGAGCGATTGTGAAGTTAGTGAAGCTGCGTTCGCCTCTGCTATTGAGAA TCTACCTCACCCTCCTACTAGAGATAATTCTCTTTTGATTCTCAATAGCTTGAAGTCGTGGGAACTGAGCTACATGTTCTTCGATTGGATAAAGAAACAG GAGTTATTCCCCTTGGAGACTATCTTCTACAATGTGGTGTTCAAGTCCTTGAGGTTTGGGAAGCAGTTTGGAGTGATGGAGGATCTTGCTAATGAGATGG TAAGCAACGGGATTGCTCTTGATAACATTACTTATTCCACCATTATAAGTTGTGCCAAGAGGTGCAATAGTTATGATAAGGCTTTGGAGTGGTTTGAGAG GATGTATAAGACTGGGTTGATGCCTGATGAAGTTACTTACTCTGCTGTTCTTGACGTTTACGCTAAGTTGGGTAAGGTTGAGGAGGTTTTGATCTTGTAT GAGAGAGGGGTAGGTAACGGCTGGAAACCGGACCCCATTGCATTCTCTGTAATGGCTAAGATGTTTGGGGAAGCTGGGGATTACGATGGCATTAGATATG TTCTTCAAGAGATGAAAACATTAGGGGTGCAGCCTAATATGGTTGTGTACAATAACTTGTTAGAGGCAATGGGGAAGGCCGGGAAGCCCGGATTGGCTCG TAGTTTGTTTGAGGAGATGATGGATTCAGGGCTAACTCCGAATGAGAAGACATTGACTGCTTTGATAAAGATTTATGGTAAGGCTAGGTGGGGTAAAGAT GCAATGGACTTGTGGGAAAGAATGAGGTCTAAGAAATGGCCGATGGACTTCATTTTGTATAATACTTTGCTGAATATGTGTGCTGATCTTGGGCTGGTGG ATGATGCTGAGAAGCTGTTTGAGGATATGAAAAAATCAGAGAACTGCAGGCCTGATAGTTGGACTTATACAGCAATGCTTAACATCTATGGTAGTGGAGG GAATGCTTCTAAAGCCATGGAGTTGTTTGAAGTGATGTCGGATTCGGGTGTTAAACTTAATGTGATGGGGTGCACTTGTTTGATTCAGTGCTTGGGGAAG GCTAGAAAGATGGACGAGCTGGTTAACGTTTTCGATGCTTCGATTGCGCAAGGGATTAAGCCGGATGACCGGTTATGTGGGTGCTTGCTGTCTGTTGTGG CATTGTGTGAGAGCGATGAGGACGCAGTTAAGGTCGTTGGTTGTTTGCGGAAATGCAACCGCCCGAAGTTGGTTCGCCTCTTGAAAATGGTTATGGAGGA TGAGACGGCGATTAGCTTCGAAGTTGTTAAGGAAGAGTTCAAAACAGTGATGAGCAGCACAGAGACAGAGTCACGGAGACCGTTCTGCAATTGTTTGATC GATATATGTCGTAGCAAGGAGCTCCAAACAAGAGCTCATGAGCTGCTCTATCTAGGAACACTGTTTGGGCTGTACCCGGATCTGCACAATGTAACCAGGG TGGAATGGAGTCTTGATGTTCGATCACTCTCCATCGGTGCAGCCTATACTGCACTGGAGGAGTGGATGGGAACACTCGGGAAATTTGTGGAGAAGGAGGA GCTGCCCGAACTGTTTGCAGCTCACACGGGATCAGGAACGCACAAGTTTGCACAAGGGATGGCTAACTCATTTGCAGCTCATGTGGAGAAGATAGGTGCA CCCTTCAGGCAATGTGAAGAGAGAGCTGGTTGCTTTGTGGCTAGCCGAGAGGACTTGGTCGCTTGGTTGGAGTGGAGGTCTTCTGCCAAAGCAACAGCAG CTTAA
AA sequence Show only first row Show all	>Lus10000897 pacid=23159151 polypeptide=Lus10000897 locus=Lus10000897.g ID=Lus10000897.BGIv1.0 annot-version=v1.0 MAATLSAAAAMDVHFTTHQSDGNRTFFFSSASSSSSKNSCLPFSFARNSIFLCRRQISITASATESPNDSKNQSLSEQLKPLSTATLSAGPDHREAQLTT TRPKSVWVNPAKPRRSVLSLHRHKRSPYQHNPKVDQHNQKVEELRLFARKLSDCEVSEAAFASAIENLPHPPTRDNSLLILNSLKSWELSYMFFDWIKKQ ELFPLETIFYNVVFKSLRFGKQFGVMEDLANEMVSNGIALDNITYSTIISCAKRCNSYDKALEWFERMYKTGLMPDEVTYSAVLDVYAKLGKVEEVLILY ERGVGNGWKPDPIAFSVMAKMFGEAGDYDGIRYVLQEMKTLGVQPNMVVYNNLLEAMGKAGKPGLARSLFEEMMDSGLTPNEKTLTALIKIYGKARWGKD AMDLWERMRSKKWPMDFILYNTLLNMCADLGLVDDAEKLFEDMKKSENCRPDSWTYTAMLNIYGSGGNASKAMELFEVMSDSGVKLNVMGCTCLIQCLGK ARKMDELVNVFDASIAQGIKPDDRLCGCLLSVVALCESDEDAVKVVGCLRKCNRPKLVRLLKMVMEDETAISFEVVKEEFKTVMSSTETESRRPFCNCLI DICRSKELQTRAHELLYLGTLFGLYPDLHNVTRVEWSLDVRSLSIGAAYTALEEWMGTLGKFVEKEELPELFAAHTGSGTHKFAQGMANSFAAHVEKIGA PFRQCEERAGCFVASREDLVAWLEWRSSAKATAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10000897 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	1.0	0.9636
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10005945 [exp]	4.9	0.9210
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	4.9	0.9414
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10029446 [exp]	5.2	0.9276
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	5.7	0.9316
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	6.6	0.9418
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	7.9	0.9330
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	8.9	0.9407
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	9.5	0.9169
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	10.7	0.9356

Compare expression of checked genes

Lus10000897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.