Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17970 630 / 0 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 591 / 0 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 563 / 0 Aluminium activated malate transporter family protein (.1) AT3G18440 287 / 7e-90 ATALMT9 aluminum-activated malate transporter 9 (.1) AT4G00910 270 / 2e-84 Aluminium activated malate transporter family protein (.1) AT1G08440 265 / 2e-82 Aluminium activated malate transporter family protein (.1) AT1G18420 257 / 1e-78 Aluminium activated malate transporter family protein (.1) AT2G17470 246 / 1e-74 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G08430 244 / 1e-74 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT1G68600 243 / 9e-74 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004556 [exp] 920 / 0 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 779 / 0 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 267 / 2e-83 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 265 / 2e-82 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10027657 [exp] 256 / 8e-78 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10033223 [exp] 247 / 6e-76 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 246 / 3e-75 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10034301 [exp] 240 / 3e-72 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 237 / 8e-71 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144300 [exp] 701 / 0 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.001G085900 [exp] 297 / 8e-95 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 296 / 2e-94 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 296 / 2e-94 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 275 / 2e-86 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 275 / 2e-86 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.005G208500 [exp] 270 / 5e-85 AT4G17970 228 / 4e-69 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.009G017800 [exp] 271 / 1e-84 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 266 / 4e-83 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.015G053400 [exp] 267 / 2e-82 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10000898 pacid=23159153 polypeptide=Lus10000898 locus=Lus10000898.g ID=Lus10000898.BGIv1.0 annot-version=v1.0 ATGGAGATGGCCTGGTGGTGGTGGTGTAAGAACAAGGCAGGGATGGCGTTGGAGAAGGCCAAGAGAGCTCCTGGTTTGGCCTTGCGTAGAATGTGGAAAC TAGGTAGAGACGACCCTCGCAGAGCCATTCATGCAGTTAAAGTTGGACTGGCACTCACCCTCGTCTCCTTGCTATACCTTCTGGAGCCACTCTTTGAAGG AATCGGCCAGAACGCCATTTGGGCCGTCATGACTGTCGTCGTTGTCCTCGAGTTCACTGCTGGTGCGACGCTATGCAAAGGGCTGAACAGAGGGCTAGGG ACCATACTAGCAGGTTCCCTCGCCTTTTTCATCGAATTCATTGCCGAGGAGACTGGACATCTCTACCGTGCCATTTTCATCGCCATTTCTGTCTTCATTA TTGGGGCTTTGGCTACATACCTGAGGTTCTTCCCTTACGTGAAGAAGAACTACGACTACGGAGTGGTAATATTCCTCCTCACATTCAACCTCATCACTGT TTCAAGCTTCAGAATCAGCAACGTTTTGAAGATTGCACATGAACGCTTCATCACCATTGCCATTGGATGCGCCATCTGCCTCTTTATGTCCCTCCTTGTT TTCCCCATCTGGTCTAGCCAAGACTTGCACAACTCCACCGTCAATAAGCTCCAAGGCCTTGCCAATTCCATTGAGGCTTGTGTCAATGACTACTTTAATG ATCAAGAAACAGCTGATGAGAAACAAGAGGATGATGATGAGAGTAAGGATGAGGACCCGATATACAAAGGGTACAAGGCAGTTTTGGACTCAAAATCGGC AGATGAGACTTTGGCACTATACGCTAGCTGGGAGCCGAGGCATTCGAGGCAGTGTAGATACCCATGGCAGCAGTATGTCCAAGTTGGAGCTGCCCTTCGC CGCTTCAGCTACACTGTTGTAGCCCTCCATGGCTGTTTGCAAACAGAAATCCAGACTCCGAAATCATGCAGAGCTCTGTTCAAGGACCCTTGTGTTAGGT TAGCAAGTCAAGTTGCTAAAGTGCTCAAGGAGTTGGCCACCAGCATCGACAACAGGACACACTGTTCGCCTGAGATACTGTCGGATCACCTTCAGAAAGC GTTGCAGGACTTGAACAATGCAATCAAGTCACAACCGAGGCTCTTCCTTGGCTCCAACACTAACCAAGTCACCAACATTCTAGCTATGGCTGCTGCCCAA GCTCGTCAGGAGAAGAACAATAACGCCTCATTATCATCTGTTAAGACGGATACATCAGCATTGATTGGATGGAAGAAGGATCACCACCACCATCATCAAG CGACGGAGAGGAAGGTGTTGAGACCACAGCTGAGCAAGATTGCGATGATGACATGCAGCCTTGAGTTTTGTGAGGCGCTTCCTTTTGCAGCATTCGCTTC TCTGCTCGTGGAGACCGTGGCTAGGCTTGATAATGTGATGGAGCAAGTTGAGGAGCTTGCCAGAGTTGCTTGCTTCAAGGAGTATGTTAAACCTGATGTT AATAATAATGATGTTGCGGTGACTGTGAAATCTGAAACTCCTAAAGTGATTGCTGCTCATACTAATTTGCCCACTCATAGCTCTGATTGA
AA sequence Show only first row Show all	>Lus10000898 pacid=23159153 polypeptide=Lus10000898 locus=Lus10000898.g ID=Lus10000898.BGIv1.0 annot-version=v1.0 MEMAWWWWCKNKAGMALEKAKRAPGLALRRMWKLGRDDPRRAIHAVKVGLALTLVSLLYLLEPLFEGIGQNAIWAVMTVVVVLEFTAGATLCKGLNRGLG TILAGSLAFFIEFIAEETGHLYRAIFIAISVFIIGALATYLRFFPYVKKNYDYGVVIFLLTFNLITVSSFRISNVLKIAHERFITIAIGCAICLFMSLLV FPIWSSQDLHNSTVNKLQGLANSIEACVNDYFNDQETADEKQEDDDESKDEDPIYKGYKAVLDSKSADETLALYASWEPRHSRQCRYPWQQYVQVGAALR RFSYTVVALHGCLQTEIQTPKSCRALFKDPCVRLASQVAKVLKELATSIDNRTHCSPEILSDHLQKALQDLNNAIKSQPRLFLGSNTNQVTNILAMAAAQ ARQEKNNNASLSSVKTDTSALIGWKKDHHHHHQATERKVLRPQLSKIAMMTCSLEFCEALPFAAFASLLVETVARLDNVMEQVEELARVACFKEYVKPDV NNNDVAVTVKSETPKVIAAHTNLPTHSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10000898 [exp]	0	1
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	1.0	0.9604
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	1.4	0.9428
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10018836 [exp]	1.7	0.9418
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	9.9	0.9141
AT3G24530			AAA-type ATPase family protein...		Lus10011097 [exp]	20.5	0.8610
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009001 [exp]	26.1	0.8990
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	26.5	0.9330
					Lus10025807 [exp]	34.4	0.9212
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	35.4	0.9207
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	38.4	0.9153

Compare expression of checked genes

Lus10000898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.