Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35330 415 / 9e-140 RING/U-box superfamily protein (.1.2) AT1G32530 340 / 1e-110 RING/U-box superfamily protein (.1) AT4G03000 179 / 2e-49 RING/U-box superfamily protein (.1.2) AT1G03365 174 / 6e-48 RING/U-box superfamily protein (.1) AT1G18470 53 / 3e-07 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G73950 52 / 3e-07 Transmembrane Fragile-X-F-associated protein (.1) AT1G68820 48 / 9e-06 Transmembrane Fragile-X-F-associated protein (.1) AT1G63900 46 / 2e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT3G06140 44 / 0.0002 RING/U-box superfamily protein (.1) AT3G12920 44 / 0.0002 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004557 [exp] 730 / 0 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 249 / 2e-74 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 246 / 1e-73 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10041245 [exp] 241 / 2e-71 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 238 / 3e-70 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 90 / 4e-19 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10042969 [exp] 54 / 8e-08 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10032471 [exp] 54 / 1e-07 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10004419 [exp] 47 / 3e-05 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090000 [exp] 526 / 0 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 493 / 6e-170 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 265 / 2e-80 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.010G027900 [exp] 259 / 2e-78 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.012G119200 [exp] 51 / 7e-07 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.015G050300 [exp] 50 / 1e-06 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.008G116400 [exp] 50 / 2e-06 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.012G060100 [exp] 47 / 1e-05 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.015G118000 [exp] 46 / 2e-05 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G074800 [exp] 45 / 6e-05 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000899 pacid=23159142 polypeptide=Lus10000899 locus=Lus10000899.g ID=Lus10000899.BGIv1.0 annot-version=v1.0 ATGCGATATCAGCTTCAGGCCTCTACTAGTGGTAACCCAACTGTGCAAATGGCTCCAGCTGCAGTTGAAGTGGGTGAGGAATCACAGGTTTTGAGAAACC AAGATGAAGTCAGCTCAGTGTTGAACAAGTTTCGTGATTTAAATCTCGAAGAAAATTTGGAGTCTCCAACCGATGAACAGAAGGATGATATGATAGTGAC TCTGTTTCATCAAATTCAGGACCTTGATAAGCAAGTGAAGGAGCGGAAGGAATGGTCACAACAGAAGGCGATGCAAGCTGCAAGAAAGCTGACTAATGAT CTCACGGAGCTTAAAGTATTGAGGATGGAAAAGGAGGAGAACCAGCGATTGAAGAAAGGGAAACAAACACTTGAAGACTCGACAATGAAGCGACTTTCAG AGATGGAGAATGCTTTAAGGAAGGCCAGTGGTCAAGTCGACAGGGCTAATGCTGCTGTGAGAAGGCTTGAGACTGAGAATGCAGAAATCAGAGCAGAGAT GGAAGCCTCTAAGTTAAATGCAGCTGAGTCTGTAACAACCTGTCTAGAAGCTGCGAAGAGAGAAAAGAAGTGTCTGAAGAGGCTTTTGGCCTGGGAGAAA AATAAAGCAAAGCTGCAGGACGAGATTGCTGACGAGAAAGAGAAGATCAAGGAGTTGCAACGCTGTCTGGGTTTGGTTGAACAGGCCCAGAGAGATGCCG AGGCGAAGTGGCGTCAGGCATTGAAGGGGAAAGAGCAAGTTTTGGCGCAGGTAGAAGAAGAAAGACTCGCCAAGGAAGCTGCAGAGGCAAACAATAAAAG GAAGCTTGAGGCGTTGCGTCTGAAGATAGAGATAGACTTCCAGCGGCACAAGGATGACGTTCAAAGACTGGAGCAGGAGCTCTCCCGTCTGAAGTCGTCA GTAGAATGCAACGAGTCGAACGATCAGTTGCACAATCCACCTCAAGGAGGAGGAAAGGCCGAGAAGAGGAGAAGTCAAGGACGAACGATTGCGAAGATGC TTCATAATTTGGAGAAACTGGAGGATTCTTCCGAGAAACGAGGCAACCATGACAGAGAATGCGTAATCTGCATGAAAGAGGAGGTCTCAATGTTGTTCCT TCCGTGTGCACACAAAGTGATGTGTGCCATGTGCAATGACAACTATGGGAAGAAGGGAAAAGCTACTTGTCCGTGCTGCCGTGTCCCGATTGAGGAGAGA ATCCATGTGTTTGGAGCAAGTTCGTAG
AA sequence Show only first row Show all	>Lus10000899 pacid=23159142 polypeptide=Lus10000899 locus=Lus10000899.g ID=Lus10000899.BGIv1.0 annot-version=v1.0 MRYQLQASTSGNPTVQMAPAAVEVGEESQVLRNQDEVSSVLNKFRDLNLEENLESPTDEQKDDMIVTLFHQIQDLDKQVKERKEWSQQKAMQAARKLTND LTELKVLRMEKEENQRLKKGKQTLEDSTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLNAAESVTTCLEAAKREKKCLKRLLAWEK NKAKLQDEIADEKEKIKELQRCLGLVEQAQRDAEAKWRQALKGKEQVLAQVEEERLAKEAAEANNKRKLEALRLKIEIDFQRHKDDVQRLEQELSRLKSS VECNESNDQLHNPPQGGGKAEKRRSQGRTIAKMLHNLEKLEDSSEKRGNHDRECVICMKEEVSMLFLPCAHKVMCAMCNDNYGKKGKATCPCCRVPIEER IHVFGASS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35330			RING/U-box superfamily protein...		Lus10000899 [exp]	0	1
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	2.4	0.8511
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	2.6	0.8602
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	11.3	0.8200
AT2G35900			unknown protein		Lus10021249 [exp]	11.8	0.8119
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	11.9	0.8396
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030139 [exp]	13.0	0.7864
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	14.1	0.7872
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	19.4	0.7827
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	20.3	0.7897
AT4G25670			unknown protein		Lus10038842 [exp]	21.0	0.7855

Compare expression of checked genes

Lus10000899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.