Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17440 365 / 2e-121 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT4G35470 348 / 2e-114 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G11330 177 / 2e-49 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 173 / 4e-48 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G26500 156 / 5e-42 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT1G12970 154 / 2e-41 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT4G26050 135 / 3e-35 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT4G29880 131 / 9e-34 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT2G19330 131 / 9e-34 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT3G15410 105 / 7e-24 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004559 [exp] 431 / 4e-151 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10035976 [exp] 384 / 2e-128 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 369 / 9e-116 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10004558 [exp] 239 / 2e-76 AT4G35470 92 / 3e-21 plant intracellular ras group-related LRR 4 (.1) Lus10017948 [exp] 160 / 4e-43 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10013689 [exp] 158 / 4e-43 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 143 / 4e-38 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10004046 [exp] 97 / 4e-21 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 96 / 2e-20 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090100 [exp] 576 / 0 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.001G144100 [exp] 569 / 0 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.007G065000 [exp] 389 / 6e-130 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 387 / 3e-129 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.010G046500 [exp] 160 / 2e-43 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.015G083800 [exp] 156 / 6e-42 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.012G085600 [exp] 148 / 6e-39 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.018G139700 [exp] 134 / 9e-35 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 132 / 5e-34 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.004G088500 [exp] 115 / 8e-27 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10000900 pacid=23159139 polypeptide=Lus10000900 locus=Lus10000900.g ID=Lus10000900.BGIv1.0 annot-version=v1.0 ATGTCCGTGAAATCAACCGACGGCGGCCACTCTCCGCCGGCTTCCTTGGTGGACACCGTCGGCGAAATCATGTCTCTGTATAGATCCCTCCCGCCGAGGC CTTCCATCGATGAAGTGGAGGCCGCTGTCTCCGTCGTGAAGTCTGTTAAGGCCGAGGAGCAGTCCAAGCTCGAAGACATCTCCACTCACCGATGCCCGCC GGAGGTCCCGGAGGAGCTCTTCGCGCTCCTGCAGCAGGTAAGGAGGACCGTGTCCTTTTTCCAGAGCCGCGAGCAGAGCAGGGAGGCGCTTCACTTGGTT GAGCTCGATGAGATGTTCGAGTCGCTTGATGGACTGATCCAGCGAGCTTCGCTGCTAGTCTCCGGGGACACTGGCAAGGAAGAATCGGCTGGGGTAGAAG AGACGGGCGTCACGAGTGTGAAAGAGAACAGCCGGGCGAGTGAAGTTAAGTCTGATGAGAAACTAAGTCTGCTCAAGGTTGCAGCAGTTATAGAGAACTC TGCTAAATCTGGAATCGAGTTCATCGATCTTAGAGGCAAGTTAATGGATCAAGTAGAGTGGCTTCCTGTATCAATTGGGAAGCTATCAGCTGTTACTGAA TTAGACTTCTCTGAGAACAAAATCATGGCACTTCCACCGTCTATTGCCAACCTCAAAACAGTGACAAAGCTTGATCTTCACTCAAACCAGCTGATGAACC TTCCAGACTCGTTCGGGGAGTTGACGAGTCTAACTGATCTCGATCTCCACGCCAATAAATTAAGGTCACTCCCAGCTTCAATTGGGAACTTGAAGAACAT AGTGAACTTAGATTTGAGCTCAAATCACTTCACTTCCTTACCAGACACCGTAGGAGACTTGTCGAAGCTCAAGACACTGAATGCTGAAACAAATGAGCTT GAGGAGCTTCCTTACACAATCGGAAACTGTTCCTCTCTCACAGAGCTGAGGTTAGATTTCAACAATCTGAAGGGTCTGCCTGAAGCAGTTGGGAAGCTTG AATGCTTGGAAATTCTGACTCTGCACTACAACAGAGTCAAGAGCTTGCCAACCACAATGGGGAATCTCTTGAAACTCAAAGAGATTGATGTCAGCTTCAA CGAGTTAGAGTACATACCCGAAAGCCTGTGTTTTGCAGTACAGCTGAAGAAGATAAATGCAGGGAAGAACTTTGCGGACCTGAGAGCGTTGCCCAAATCC ATCGGAAACCTGGAGATGCTTGAAGAGTTGGATATAAGTGATGACCAAATAAGAACGTTGCCTGATTCTTTCAGCCTCCTGTCTAAGCTTAGAGTGTTTC TTGCTCATGAAACCCCTCTAGAAGTACCCCCAAGAGAAGTATGCAAATTGGGCGCTCAGGCTGTGGTGCAGCACATGGCTGACCTTGTCGCGAACAAGGA CTCGATATCGTCACAGAGTTTGAAAAAGGAGAAAGGTATCTGGTTAAGGATCTGCTTGTTCTGTTTCCCGTTCTTCAGTTCTTCCAAATGA
AA sequence Show only first row Show all	>Lus10000900 pacid=23159139 polypeptide=Lus10000900 locus=Lus10000900.g ID=Lus10000900.BGIv1.0 annot-version=v1.0 MSVKSTDGGHSPPASLVDTVGEIMSLYRSLPPRPSIDEVEAAVSVVKSVKAEEQSKLEDISTHRCPPEVPEELFALLQQVRRTVSFFQSREQSREALHLV ELDEMFESLDGLIQRASLLVSGDTGKEESAGVEETGVTSVKENSRASEVKSDEKLSLLKVAAVIENSAKSGIEFIDLRGKLMDQVEWLPVSIGKLSAVTE LDFSENKIMALPPSIANLKTVTKLDLHSNQLMNLPDSFGELTSLTDLDLHANKLRSLPASIGNLKNIVNLDLSSNHFTSLPDTVGDLSKLKTLNAETNEL EELPYTIGNCSSLTELRLDFNNLKGLPEAVGKLECLEILTLHYNRVKSLPTTMGNLLKLKEIDVSFNELEYIPESLCFAVQLKKINAGKNFADLRALPKS IGNLEMLEELDISDDQIRTLPDSFSLLSKLRVFLAHETPLEVPPREVCKLGAQAVVQHMADLVANKDSISSQSLKKEKGIWLRICLFCFPFFSSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	0	1
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	1.4	0.9012
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	2.8	0.8917
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	4.7	0.9115
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	5.0	0.8873
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	5.5	0.8856
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	9.2	0.8408
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	12.0	0.8780
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	12.8	0.8943
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10040492 [exp]	15.8	0.8311
					Lus10017445 [exp]	20.8	0.8620

Compare expression of checked genes

Lus10000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.