Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000085 [exp] 345 / 9e-124 ND / Lus10004560 [exp] 332 / 3e-117 ND / Lus10035370 [exp] 136 / 2e-40 ND / Lus10030974 [exp] 102 / 4e-28 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000901 pacid=23159143 polypeptide=Lus10000901 locus=Lus10000901.g ID=Lus10000901.BGIv1.0 annot-version=v1.0 ATGGCCGTGGAGTTGGACCTCACGGACGATGCCCACCCGGATCTCTCATTCCAGAACATGAGCAATATCTTCCGCTTCACGAACCGGAAAGAGGACCTTA ACATCAGCATCTGGTTCGTGGAGGCACTAATCTTGTACAGGGGGATACCGGTGAAGTGCATGTTAGGGCACCAGAAGCTCAAGCTAAATGGTCGGAGCGA GGGGGCATGGCAGATGAAGGAAGTGTTTTGCAACCGCAGGGCTAAACAACATGAACTCCCATCGTTCCCATTTGGTAAGGAGATGCTCAGTGACGCACGA ACAATGGGCAGAGTCCAGTTTGGGGTGACGGTGAGCGTTCACGTCGTGTATACTCACCGCCCGTTGGGCTATTGGGAGGCGTTGTATAGGCCAGCGTGTT CCCCGTTGGTGCTTAATGTGTTAAATAATAGAGGTGAAGAAGAAGTAAGTGGTGACATTAGTAGTCATTACAATGGTGCTCAAGAAAAGGATTTGTTCAT AGGAGTTGGAAGCTTGTCTTGTAATATTCAAGATCCCTTGTGGGTCAAGTAA
AA sequence Show only first row Show all	>Lus10000901 pacid=23159143 polypeptide=Lus10000901 locus=Lus10000901.g ID=Lus10000901.BGIv1.0 annot-version=v1.0 MAVELDLTDDAHPDLSFQNMSNIFRFTNRKEDLNISIWFVEALILYRGIPVKCMLGHQKLKLNGRSEGAWQMKEVFCNRRAKQHELPSFPFGKEMLSDAR TMGRVQFGVTVSVHVVYTHRPLGYWEALYRPACSPLVLNVLNNRGEEEVSGDISSHYNGAQEKDLFIGVGSLSCNIQDPLWVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000901 [exp]	0	1
					Lus10000085 [exp]	1.0	0.9286
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	3.5	0.7838
					Lus10027003 [exp]	5.7	0.7841
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10029061 [exp]	7.7	0.7138
					Lus10033046 [exp]	8.5	0.6900
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	12.0	0.7689
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041128 [exp]	17.0	0.6603
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	18.5	0.6610
AT2G22180			hydroxyproline-rich glycoprote...		Lus10019667 [exp]	19.0	0.6579
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	19.9	0.6599

Compare expression of checked genes

Lus10000901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.