Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17890 177 / 5e-53 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 173 / 5e-51 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 154 / 1e-43 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT5G13300 42 / 0.0004 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT1G60860 42 / 0.0007 AGD2 ARF-GAP domain 2 (.1) AT1G10870 41 / 0.001 AGD4 ARF-GAP domain 4 (.1) AT5G61980 41 / 0.001 AGD1 ARF-GAP domain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004561 [exp] 315 / 9e-107 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10000903 [exp] 233 / 2e-74 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 208 / 4e-64 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10004125 [exp] 80 / 7e-17 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10030568 [exp] 42 / 0.0004 AT1G60860 925 / 0.0 ARF-GAP domain 2 (.1) Lus10001799 [exp] 41 / 0.001 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10016724 [exp] 41 / 0.001 AT5G61980 1060 / 0.0 ARF-GAP domain 1 (.1) Lus10036018 [exp] 41 / 0.001 AT5G61980 1009 / 0.0 ARF-GAP domain 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092300 [exp] 225 / 5e-71 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.001G142100 [exp] 222 / 1e-69 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.015G105500 [exp] 45 / 4e-05 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1) Potri.003G163200 [exp] 42 / 0.0005 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.001G066800 [exp] 41 / 0.0008 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10000902 pacid=23159150 polypeptide=Lus10000902 locus=Lus10000902.g ID=Lus10000902.BGIv1.0 annot-version=v1.0 ATGGCCAAACCCTTCAAACACTTGGAACCGACCCGGGAAAAAACGCTCGACCCGACTCGTTTCACGCGTTCACCACACGCGCCGTCGCACCTCACGCGCC TTATCCTTTGTATTGATTGCTCTGCTGTTCATCGTAACCTCGGTGTTCATGTTAGTTTTGTCAGGCAGCACGGGTGGGGGGGGGAATTGAGGACAAGTAC TCGTCTAGAGCTGCCGATCTGTATATGCAAATTCTGTTCGAAGGAGGTTGCAAAAAGCTTGGCAGAAGAAGTGGTCCTGCCATCATCACCAATTGCCTCT CAGACTTCTCAAGGGGTGAATGGACTAGCTGATATGACTATAAATGATGCTTCTAAAGAAACTTCATTGGCAAAGCCAGAGAAACCTGATGTAGCTCATT CTTCAGCCCCTCCATCAAATGCCCCTGCTGCAGTAACTGCTTCTACTGTCAGGAAGCCTCTTGGAGCAAAGAAAACTGGCAAGACTGGGGCTTTTCTAAA TCTATATTCAACTAATAGTAAATGTTATAACTCACAGCCAACTGAAAGTCTTTATGACCAAAAGCCGGAGGAATTACCCTTTCCTATTCCTTCGTCTTCT GCTAGCAACTCAAAAACCGGGGCATCTCTTGCATCTCGTTTTGAGTATGTTGAGGAAACGGATGAAGCCAGAAAGAAGTTTTTAAATGCCAAGTCAATTT CATCAGCACAATTCTTCGGCGATCAAGCGAAATCAGGTGACGTCATTGCTCAAGCTTCTGTTGAGAAATTCTCTGGTTCTGCAGCCATATCGAGTGCAGA TCTTTTTGGCCACATCAGCAACGACCCAACCATCAATCTTGCTGCAAGTGATCTGATCAACCGGCTGTCTTTCCAGGCAAAGGCTACGATTCTCTGTTGC AAGAGTTAG
AA sequence Show only first row Show all	>Lus10000902 pacid=23159150 polypeptide=Lus10000902 locus=Lus10000902.g ID=Lus10000902.BGIv1.0 annot-version=v1.0 MAKPFKHLEPTREKTLDPTRFTRSPHAPSHLTRLILCIDCSAVHRNLGVHVSFVRQHGWGGELRTSTRLELPICICKFCSKEVAKSLAEEVVLPSSPIAS QTSQGVNGLADMTINDASKETSLAKPEKPDVAHSSAPPSNAPAAVTASTVRKPLGAKKTGKTGAFLNLYSTNSKCYNSQPTESLYDQKPEELPFPIPSSS ASNSKTGASLASRFEYVEETDEARKKFLNAKSISSAQFFGDQAKSGDVIAQASVEKFSGSAAISSADLFGHISNDPTINLAASDLINRLSFQAKATILCC KS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35210		RPA, AGD10, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10000902 [exp]	0	1
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039993 [exp]	1.0	0.8819
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	3.2	0.8353
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	4.2	0.8277
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	11.5	0.7716
AT2G38570			unknown protein		Lus10022733 [exp]	17.0	0.8002
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	17.4	0.8229
AT1G32120			unknown protein		Lus10017876 [exp]	17.9	0.7397
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10037114 [exp]	20.7	0.7789
AT1G54680			unknown protein		Lus10033821 [exp]	21.8	0.8103
AT3G57000			nucleolar essential protein-re...		Lus10028959 [exp]	25.5	0.7343

Compare expression of checked genes

Lus10000902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.