Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46800 430 / 4e-153 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT2G33820 149 / 1e-42 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT1G79900 125 / 1e-33 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G48970 100 / 3e-24 Mitochondrial substrate carrier family protein (.1) AT1G25380 95 / 4e-22 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT2G47490 92 / 4e-21 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT4G01100 91 / 7e-21 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G21390 89 / 5e-20 Mitochondrial substrate carrier family protein (.1) AT5G58970 81 / 2e-17 ATUCP2 uncoupling protein 2 (.1.2) AT3G54110 79 / 9e-17 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004565 [exp] 523 / 0 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10015420 [exp] 134 / 5e-37 AT2G33820 415 / 7e-147 Mitochondrial substrate carrier family protein (.1) Lus10037544 [exp] 131 / 6e-36 AT1G79900 408 / 2e-144 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10011451 [exp] 127 / 1e-34 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 105 / 9e-26 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 98 / 2e-23 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10032365 [exp] 90 / 2e-20 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 90 / 3e-20 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 89 / 8e-20 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091500 [exp] 459 / 1e-164 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 452 / 5e-162 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.004G046801 [exp] 144 / 4e-41 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.011G056000 [exp] 142 / 4e-40 AT2G33820 460 / 9e-165 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 133 / 1e-36 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.003G053900 [exp] 121 / 4e-32 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.002G200900 [exp] 99 / 1e-23 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G024100 [exp] 99 / 2e-23 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G210000 [exp] 96 / 1e-22 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.014G125600 [exp] 94 / 8e-22 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10000906 pacid=23159144 polypeptide=Lus10000906 locus=Lus10000906.g ID=Lus10000906.BGIv1.0 annot-version=v1.0 ATGGGAGACGTTGCAAAGGACTTGGCATCAGGAACAGTAGGAGGGGCAGCACAGCTGGTAGTTGGCCATCCATTTGACACAATCAAGGTTAAGCTCCAAA GCCAGCCAGTGCCTCTCCCCGGCCAGCCTCTGAAATACACAGGCGCAATTGATGCTGTCAAGAAGACGATAGCATCCGAAGGTGCCGGAGGATTGTACAA GGGCATGGGAGCTCCTCTTGCCACTGTTGCTGCTATGAATGCTGTGCTTTTCACTGTCAGGGGACAGGTGGAGGCTCTGCTGAGGTCCGAACCCGGTGCT ACACTCACCATTGGCCAGCAGGTTGTTTGTGGTGCTGGTGCTGGCGTGGCAGTTTCTTTCCTTGCTTGTCCTACTGAATTGATCAAGTGCAGGCTGCAAG CGCAAAGCGCAATGGCAGTGGCTGACTCAGCCACTGTAGTAGCAGTGAAGTATGGAGGACCAATGGACGTAGCTAAACAAGTTTTGAGATCCGAAGGCGG CATAAGGGGACTCTTCAAGGGCTTAGTCCCCACTATGGCTCGCGAAATTCCTGGAAACGCAGCCATGTTTGGGACGTACGAGCTGCTGAAGCAGTCGATA GCAGGAGGGCAGGACACGTCAAAGCTAGGGAGAGGCTCGTTAATGATGGCCGGAGGTCTAGCTGGCGCATCCTTCTGGGTTTCAGTCTATCCTACCGATG TTGTGAAGAGTGTCATCCAAGTTGATGACTTCAGGAACCCCAAGTACTCGGGCTCCATGGACGCTTTCAGGAAGATCCTGGCGTCGGAAGGTGTTAAGGG TTTGTACAAAGGTTTCGGCCCTGCCATGGCCCGGAGTATCCCTGCCAATGCAGCTTGTTTCCTGGCTTATGAGTTGACGAGATCTAGCCTCGGCTGA
AA sequence Show only first row Show all	>Lus10000906 pacid=23159144 polypeptide=Lus10000906 locus=Lus10000906.g ID=Lus10000906.BGIv1.0 annot-version=v1.0 MGDVAKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPVPLPGQPLKYTGAIDAVKKTIASEGAGGLYKGMGAPLATVAAMNAVLFTVRGQVEALLRSEPGA TLTIGQQVVCGAGAGVAVSFLACPTELIKCRLQAQSAMAVADSATVVAVKYGGPMDVAKQVLRSEGGIRGLFKGLVPTMAREIPGNAAMFGTYELLKQSI AGGQDTSKLGRGSLMMAGGLAGASFWVSVYPTDVVKSVIQVDDFRNPKYSGSMDAFRKILASEGVKGLYKGFGPAMARSIPANAACFLAYELTRSSLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	0	1
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	1.0	0.9322
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	3.2	0.9200
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	5.3	0.9058
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	6.0	0.9009
AT1G22750			unknown protein		Lus10028718 [exp]	6.3	0.9034
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	6.9	0.9088
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	9.5	0.8994
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	9.7	0.8829
AT5G62140			unknown protein		Lus10015008 [exp]	9.9	0.9043
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	10.0	0.9054

Compare expression of checked genes

Lus10000906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.