Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46795 67 / 1e-13 MSP2 microspore-specific promoter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004566 [exp] 266 / 2e-91 AT5G46795 52 / 3e-08 microspore-specific promoter 2 (.1) Lus10029516 [exp] 44 / 3e-05 AT1G07985 69 / 3e-15 Expressed protein (.1) Lus10017917 [exp] 41 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091600 [exp] 81 / 1e-18 AT5G46795 81 / 3e-19 microspore-specific promoter 2 (.1) Potri.001G456100 [exp] 64 / 8e-13 ND / Potri.011G146000 [exp] 62 / 7e-12 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000907 pacid=23159140 polypeptide=Lus10000907 locus=Lus10000907.g ID=Lus10000907.BGIv1.0 annot-version=v1.0 ATGGCAACAGTAATGCAGGAAGAAGCAGGAAGAACAGTGCAGAAGGCAGCCACTCACCATTTCCCTCCTGTTCCTCTTGTTTCCAGACTGGATCATTTGG ATTCCCTTATGAAGTTCTTAGAAGGGAAACAAAGCTCACAAAAGTGCTTGAATGGAGGAGGAACAGCAGTAGTTGACACAGCAAAGCAACAGCAGAATGC AGCATTGATGGAGGTGGCAATGAAGGAGGCTTATTTCAAAGGCTCGTTGTTGGACCGAGTAGCTTCTCTCGAGCATCGCCTCTTTCAGCTATGTATGGAG ATGGACTCAACAAGCACATCAGCAAGTTCATCACAAACATCAGGAGGATGCACCTCAGCCTCCTCCACCACTACCGGCACCACTGTGATGGGATTCCGAA CCCAAATGCCTTCATCATTACCAACTTTCGGCCTTCCGAATCAACGCCAGCCTCTTCTTCACCACCCTGCTAGGTCTCATCTTCAGCAGGTAGAGGAGGA GAAAGAGGAAGAAGAGGAGAGTAAGAGGAACAAGGATTCGAAGAAAGTCGGAAAATGCAGTAAAACCAAAGGGGATGAGAGTAAGAACTGCAGATCATCA AATGGGAATAATAACAAGAAGCAGCTGAGTTGGGCAAAGATTAGACCCCTTAAACTTTTAGGATGCTAA
AA sequence Show only first row Show all	>Lus10000907 pacid=23159140 polypeptide=Lus10000907 locus=Lus10000907.g ID=Lus10000907.BGIv1.0 annot-version=v1.0 MATVMQEEAGRTVQKAATHHFPPVPLVSRLDHLDSLMKFLEGKQSSQKCLNGGGTAVVDTAKQQQNAALMEVAMKEAYFKGSLLDRVASLEHRLFQLCME MDSTSTSASSSQTSGGCTSASSTTTGTTVMGFRTQMPSSLPTFGLPNQRQPLLHHPARSHLQQVEEEKEEEEESKRNKDSKKVGKCSKTKGDESKNCRSS NGNNNKKQLSWAKIRPLKLLGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46795		MSP2	microspore-specific promoter ...		Lus10000907 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10033415 [exp]	3.6	0.7468
					Lus10013299 [exp]	4.2	0.6822
AT1G64870			unknown protein		Lus10002022 [exp]	5.8	0.7198
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10039330 [exp]	6.9	0.5593
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10033554 [exp]	12.2	0.5690
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015243 [exp]	15.5	0.6336
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10017241 [exp]	16.4	0.6379
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10015743 [exp]	24.1	0.6189
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10011977 [exp]	40.0	0.5848
AT5G02280			SNARE-like superfamily protein...		Lus10023793 [exp]	40.4	0.5323

Compare expression of checked genes

Lus10000907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.