Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32340 607 / 0 NHL8 NDR1/HIN1-like 8 (.1) AT2G31780 82 / 4e-16 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT3G14250 77 / 4e-15 RING/U-box superfamily protein (.1) AT2G31760 74 / 8e-14 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31510 73 / 2e-13 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT3G27710 72 / 5e-13 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G16090 72 / 6e-13 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT1G05890 70 / 2e-12 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT4G34370 70 / 3e-12 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT3G53690 68 / 5e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004569 [exp] 893 / 0 AT1G32340 535 / 0.0 NDR1/HIN1-like 8 (.1) Lus10004568 [exp] 436 / 1e-147 AT1G32340 382 / 5e-126 NDR1/HIN1-like 8 (.1) Lus10013371 [exp] 100 / 4e-22 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 74 / 2e-13 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 70 / 4e-12 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10026856 [exp] 69 / 8e-12 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10020229 [exp] 67 / 4e-11 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10042348 [exp] 65 / 1e-10 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10040508 [exp] 64 / 3e-10 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139400 [exp] 640 / 0 AT1G32340 741 / 0.0 NDR1/HIN1-like 8 (.1) Potri.002G131200 [exp] 76 / 3e-14 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.003G187700 [exp] 73 / 6e-14 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 72 / 2e-13 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.008G077100 [exp] 71 / 1e-12 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 70 / 2e-12 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 68 / 1e-11 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 68 / 1e-11 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.017G032000 [exp] 68 / 1e-11 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.001G037200 [exp] 65 / 3e-11 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF05773 [flax] [poplar] RWD RWD domain CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10000908 pacid=23159154 polypeptide=Lus10000908 locus=Lus10000908.g ID=Lus10000908.BGIv1.0 annot-version=v1.0 ATGCCCAGAGGGGAAACGGGGGAGTCTACCGTTGAATCCCCTCATCTGCCAAAAGCGACGCCGGAACCGCAACCGAGTTCCCGGCGGCCAGCTCGCCGAC GACGAAACGCGTACTCGAAGAAGGAGTATGTGAAGAAATCTGACTTGGGTTCTCCGAATTCGCAGCAAATCGAGGTGGGTTTTCCGAGTTCAGCTGAGGA GCAAGATGGGGTACGGGGGAAGACTGTTGAAAGTAAGGAAGACCATATCGGGGAAGGATCATCGGAAGGCGGCATGGTTGATGTCATTAGCGTGTTGGAA GAGTTACAGTTAGCTGCAGAGGAGCTGGAGCTGTCTACAGATCAGCTCAGAGTCAACGACCAATTACAGGAGGATGAGTTACTTGCATTGGAGTCTATCT ATGGAGAAAAGGTCGTCATTGTGGATAGACAGAAAGGATTGAGATCTTTCCAGATTTATATCGAAACCAAAGTTGCTGAAGATTTTGCTATAACCACGAA TCTGAACTCTTCAAGTAAGTCCAAGAATGAAAGCACAAGTACGGATGAATTCTCATATTCCTTCAAAGTCAAGTTTCTTCCTCCAATTGTGTTGACCTGC GCATTCCCTGGATCATACCCAAGCCACAAACCTCCATATTTCACCATATCTGTTCAGTGGTTGGATTCCCGTCAAATCTCCGAGCTTTGTTCTGTGCTGG ATTCGCTATGGATGGAACAGCAGGGGCAAGAAGTTATGTACCAATGGGTTGACTACCTACAAAGCAATTCCCTTTCTCACCTTGGTATCCATCAAGAGAT GGTACTCGGTCCTTATGGAATGAAGCATACCGGAGGAGACAGGCGTGCAGTTTCGGGAATTATGTCCCCGGATGTTGATATTCCTTCGCTGAAGAGGTAT AATGATGAGCAAGGCCTTGAGAATTTCCTTAACAACTTTCAAGAGTGCTGCATCTGCTTCTCTGAGCACCCAGGCGGTGACTTCATAAAACTCTCGTGTA AGCATTTCTTCTGCCGCAACTGCATGAAGTCTTATTCAAACATACACGTCTCAGAAGGCACTGTGTATAAACTTCAGTGTCCCGAGGCAAAATGTGGGAA TATGATACCACCGAGTATACTAAAGCAGTTGCTTGGGGAAGAAGAATACGACCGCTACGAGTCTCTAATGCTACAGAAAACACTTGAGTGTATGTCAGAC GTTGTGTGCTGCCCGAGGTGTGAAATGATCTGCATCGAAGACGAACAAAACTTCGCTCAGTGCCCTAGTTGCTTCTACAGCTTCTGCTCCCTCTGCAAGG ACAAACGCCATGTCGGTGAGCCTTGCCTAACCCCAGAGTTGAAGATGTACATATTACAGGAGCGGATGAAGTCCTCTCAAATCAGCGAGAAACAAAGGCT AGCAGAGATGAATAAGATCAACGAAGTCCTGAGTGAGACTGCAATATCTCGTGATTCCAAGCAATGCCCGATTTGCAGGATGGCGATTTCCAGAACCGGC GGCTGCAACAAGATGGTGTGTAGCTACTGTGGAAACTACTTCTGTTATGCTTGTAACAAACCGATTGGAGGATACGAACACTTCAAGGATGAAGGGTGTG AACTATTTCCAGCAGAAGCAATCAAGGAGTGGGAGGAGCAGGTGAATATGCGTCAGGTTGTTGATAGGATTCGAGCTCAAAACAACATTGGTGGTCAGAG ACACGCGTGTCCTCTTTGTAGCCAGGTTAATATGAAGGCGGGGAATAACAATCATATACTGTGCTGGTCATGCCGAACCCACTACTGTTACTTATGCCGC AAGGCAGTGAAGAGGAGCAGCGAGCATTTCGGACCCAAGGGATGCAAGCAGCATTCAGATGGATAA
AA sequence Show only first row Show all	>Lus10000908 pacid=23159154 polypeptide=Lus10000908 locus=Lus10000908.g ID=Lus10000908.BGIv1.0 annot-version=v1.0 MPRGETGESTVESPHLPKATPEPQPSSRRPARRRRNAYSKKEYVKKSDLGSPNSQQIEVGFPSSAEEQDGVRGKTVESKEDHIGEGSSEGGMVDVISVLE ELQLAAEELELSTDQLRVNDQLQEDELLALESIYGEKVVIVDRQKGLRSFQIYIETKVAEDFAITTNLNSSSKSKNESTSTDEFSYSFKVKFLPPIVLTC AFPGSYPSHKPPYFTISVQWLDSRQISELCSVLDSLWMEQQGQEVMYQWVDYLQSNSLSHLGIHQEMVLGPYGMKHTGGDRRAVSGIMSPDVDIPSLKRY NDEQGLENFLNNFQECCICFSEHPGGDFIKLSCKHFFCRNCMKSYSNIHVSEGTVYKLQCPEAKCGNMIPPSILKQLLGEEEYDRYESLMLQKTLECMSD VVCCPRCEMICIEDEQNFAQCPSCFYSFCSLCKDKRHVGEPCLTPELKMYILQERMKSSQISEKQRLAEMNKINEVLSETAISRDSKQCPICRMAISRTG GCNKMVCSYCGNYFCYACNKPIGGYEHFKDEGCELFPAEAIKEWEEQVNMRQVVDRIRAQNNIGGQRHACPLCSQVNMKAGNNNHILCWSCRTHYCYLCR KAVKRSSEHFGPKGCKQHSDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10000908 [exp]	0	1
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	2.4	0.9210
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	8.5	0.9141
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10035376 [exp]	10.4	0.9046
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	10.5	0.9193
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	11.6	0.9098
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10036878 [exp]	15.7	0.9050
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	16.5	0.8935
AT5G12230		MED19A	unknown protein		Lus10028832 [exp]	17.7	0.8983
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	17.9	0.9025
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	18.5	0.9125

Compare expression of checked genes

Lus10000908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.