Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 270 / 4e-79 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 270 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 264 / 5e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 269 / 3e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 265 / 2e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 254 / 2e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 253 / 5e-74 RPF2 rna processing factor 2 (.1) AT1G63080 251 / 2e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 248 / 5e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G28010 251 / 1e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004570 [exp] 1461 / 0 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 288 / 3e-85 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 288 / 1e-84 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 285 / 1e-83 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 271 / 2e-78 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 259 / 9e-77 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10006373 [exp] 263 / 2e-76 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 262 / 4e-76 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005692 [exp] 261 / 2e-75 AT2G26790 469 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139300 [exp] 524 / 5e-176 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 284 / 5e-85 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 277 / 4e-81 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G066600 [exp] 275 / 1e-80 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 270 / 1e-79 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 266 / 7e-79 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 271 / 7e-78 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 268 / 7e-78 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 269 / 1e-77 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 260 / 7e-77 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000909 pacid=23159138 polypeptide=Lus10000909 locus=Lus10000909.g ID=Lus10000909.BGIv1.0 annot-version=v1.0 ATGGCTTTTCTTTGTCTGCATTCACAATGGTTTAGGAGAGCTTGGTTGGTTGATTGCGCTGTTTCTCCATTTGCGAAGAGCTCCTTCAGGAACTGTCTTC TTCCATCTTATATGCACCATTGTTGGCGGATGCACATCAAGTGTTCGATGTTTTCCCCCTTGGTTGAATTCATTGCTGATGTAGAGGAAAAGTCTGCCGT CTCTAGCAAGAAGGTTAGTGATCAAGAAACGGGCAAGTTGTTTCCATTTGTCACCACGTTTCTGAAGAATTTGAATTGGAGGTTAGCTAGGAAGGCCGAG TTTGCGGAAGTGGGGTTAGAGAATAGTATACAAATATTGCTTAGGGAAGTTGTTTCTTCTTACCAGGAAGCTGGTTTGGATGTTCTAGAGTTGTCTCATT GTATGTTACATTCGCCTGAGCTTGTTGGAGAGTTACCTTCCGTGTTTAGTGTATTCATAAAGGTTCTGGCGGAGAAGAAGATGCTGGAAAATGCTGTTGG GGTGTTTTTGCAGGCTAGGGAGAATAAGGTTAAACCACATATCCGTTCATGTAATTTCCTTCTCAAACTTTTAATGGAAGGGAAGGAAGCTGAAGTATTC ATGGATGTGTTCGAGCAGTTGAGAAATTTTGGTCCTCGCCCGAATGTGCATACCTACACCATTGTCTTGAACTTCTACAGGAGCATTGATTTTTTACAGA AGGTAGACCTTGAACGGGCAATGCTTGAGGTGCTTGATGAAATGGTCAGCTTCGGGCTAACCCCGTCGGTTGTTACTTACAGTACGTTTGTCCATGCTCT TTGTGAAGCTGGTTGCGTTGAGTCTGCTTTGAACTATGTACAGGGTTGGAGGAATACGGCCTGTTACTTCAATAGCTATTGTTATAATGCTATCATTCGT GGATTTTGCCATAAAGGTAAAGTGGATGAAGCATTGGAGCTTTTGGAAGAAATGAGGAGATGTTCAGTATCTCCAGACGTTTACAGCTACAGCATCTTGA TTCACGGGTTCTGCCAGAAGGGTGACATTGAGAAGGGTTGCAGTTTGTGGAAAGAAATGGGAGATTGGAACATCATGCCAAATATTGTTACGTTTACCTC CCTCTTTTCATCTCTCTGTAAAACTGGATGGGTGACCTATCTTTTGGCGAAATCTCATCTCATTGGTGACGATGAATTTGAATATGACATGACTTGTTAT AACATCTTGATTGAAAGCTGGCTCGTGTCAGGTAATTTAAGCATGGCCAATGAACTTTTGAAGGAGATGACTATGAAGGGCTTGAATCCTAAACCCTTTA CATTTAACAGGTTGATTCAAGCATTCTCCAAAGATGGGCGCTTAAAAGAAGGCTTGGAAGTGTTTAATATGATGCAAGAAGCTCTCGTCAGCCCTAATAT CTTCACCTGCAATGCAGTTGTGGACATGTATTGTAGGGATGGACGGCTTTTAGAAGCTCTTAAGGTCATGAATGAAATGCAAAATCAAGGTATTGTTCTC AACTCCTGCACATACCACATAGTAATTAAGTTGTTGTGTCTCAAAGGAATGCCAGAGAAAGCATGGGAAGTCTTTCCTGTAATGTTTAAGAGCGCTGTTT TTCTCGATGTTGATCATTACAATATCCTTATGAATGGTTTTTCCAAACAGTCAAAACCAAATGCTGCATTGATGCTGTATAATAAAATGAGAGAAGTTGG ATTGGAACCCAACAAGCTAACATACACGGTTCTCATGAACATTTTCTCAAGGAATAGGAGAATGGATCTCGCCTACCGTTTGTTCATGAAGATGACTGAA AAAGGTATCACTCCAGATCAAATTGCATATGCATCAGTTATAGTTGGGTTCTGTAGAATCGGAGATATGGAAGCGGCTTTTGAATTATACAAGAAAATGT TGAAGATAGGTCGCATCCCTGATGTTGTAACCTATACTGCTCTAATGAATGGATATTGCAAGATAAACCGCATGGATAGGGCTTGTGCATTATTTGAAGA TATGGAACGGAAAGAGTGTGTTCCAAATGTGGTAACATACACTGTTCTCATCAAAATTTTCTCAAGTAAAAGGAGTATGGATGTTGCCTACCGTTTGTTC AAGGAGATGACTGAAAAATGTATCAATCCAGATGAAATTGCATATGCATCTGTTATAGTTGGGTTCTGTAGAATCGGAGATATGGAAGCGGCTTTTGAAT TATACAAGAAAATGTTGAAGATAGGTCGCATCCCTGATGTTGTAACCTATACTGCTCTAATTAATGGATATTGCAAGATAAACCGCATGGACAGGGCTTG TGCATTATTTGAAGATATGAAACAGAAAAATTGTGTCCAAATGCGGTAA
AA sequence Show only first row Show all	>Lus10000909 pacid=23159138 polypeptide=Lus10000909 locus=Lus10000909.g ID=Lus10000909.BGIv1.0 annot-version=v1.0 MAFLCLHSQWFRRAWLVDCAVSPFAKSSFRNCLLPSYMHHCWRMHIKCSMFSPLVEFIADVEEKSAVSSKKVSDQETGKLFPFVTTFLKNLNWRLARKAE FAEVGLENSIQILLREVVSSYQEAGLDVLELSHCMLHSPELVGELPSVFSVFIKVLAEKKMLENAVGVFLQARENKVKPHIRSCNFLLKLLMEGKEAEVF MDVFEQLRNFGPRPNVHTYTIVLNFYRSIDFLQKVDLERAMLEVLDEMVSFGLTPSVVTYSTFVHALCEAGCVESALNYVQGWRNTACYFNSYCYNAIIR GFCHKGKVDEALELLEEMRRCSVSPDVYSYSILIHGFCQKGDIEKGCSLWKEMGDWNIMPNIVTFTSLFSSLCKTGWVTYLLAKSHLIGDDEFEYDMTCY NILIESWLVSGNLSMANELLKEMTMKGLNPKPFTFNRLIQAFSKDGRLKEGLEVFNMMQEALVSPNIFTCNAVVDMYCRDGRLLEALKVMNEMQNQGIVL NSCTYHIVIKLLCLKGMPEKAWEVFPVMFKSAVFLDVDHYNILMNGFSKQSKPNAALMLYNKMREVGLEPNKLTYTVLMNIFSRNRRMDLAYRLFMKMTE KGITPDQIAYASVIVGFCRIGDMEAAFELYKKMLKIGRIPDVVTYTALMNGYCKINRMDRACALFEDMERKECVPNVVTYTVLIKIFSSKRSMDVAYRLF KEMTEKCINPDEIAYASVIVGFCRIGDMEAAFELYKKMLKIGRIPDVVTYTALINGYCKINRMDRACALFEDMKQKNCVQMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	0	1
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	1.7	0.9543
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	3.5	0.9609
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	4.2	0.9636
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	6.7	0.9417
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	6.9	0.9373
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	11.3	0.9500
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	11.4	0.9401
AT5G24350			unknown protein		Lus10022371 [exp]	11.7	0.9429
AT3G50110		PTEN2B, ATPEN3	phosphatase and TENsin homolog...		Lus10010266 [exp]	12.2	0.9190
AT4G03090			sequence-specific DNA binding;...		Lus10024745 [exp]	13.9	0.9323

Compare expression of checked genes

Lus10000909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.