Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10680 742 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 730 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28860 530 / 8e-171 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G27940 512 / 5e-164 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 494 / 2e-157 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G36910 478 / 6e-151 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT2G47000 434 / 2e-134 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 432 / 9e-134 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G62150 424 / 1e-130 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT5G46540 421 / 6e-130 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004571 [exp] 915 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10005249 [exp] 524 / 2e-168 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 524 / 2e-168 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 521 / 7e-166 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10014427 [exp] 511 / 5e-164 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10023929 [exp] 513 / 2e-163 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10017270 [exp] 498 / 1e-158 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10009988 [exp] 452 / 7e-141 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 448 / 1e-139 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094400 [exp] 769 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 760 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 730 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G081100 [exp] 538 / 9e-174 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.002G019600 [exp] 533 / 4e-172 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.016G093600 [exp] 495 / 1e-156 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 493 / 7e-156 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.002G187500 [exp] 444 / 6e-138 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 429 / 1e-132 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113500 [exp] 429 / 2e-132 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10000910 pacid=23159149 polypeptide=Lus10000910 locus=Lus10000910.g ID=Lus10000910.BGIv1.0 annot-version=v1.0 ATGGCATTTGGCTCTATCGGAGCTTGTGTCCATGGTGCCTCAGTTCCTGTCTTCTTCATCTTCTTCGGCAAGTTGATCAACATCATTGGCCTTGCTTATC TCTTCCCGAAGGAAGCTTCACACAAAGTTGCCAAGTATTCATTGGACTTCTTGTACCTCAGCATAGTTATAATGTTCTCATCATGGATAGAGGTTGCATG TTGGATGCATAGTGGTGAAAGGCAGGCAGCAAAGATGAGGATGGCTTATCTAAGGGCTTTGTTAAATCAGGACATCACGTTATTTGACACCGAGGCTTCT ACTGGAGAAGTTATTGCTGCTATTACCTCTGACATTATTGTTGTCCAGGATGCCATATCTGAGAAGGCAGGGAACTTCTTGCACTATTTTAGCAGATTCT TATCTGGGTTCATCATTGGGTTTGCCAAGGTGTGGCAAATCAGCTTGGTGACACTTTCCATAGTTCCTTTCATTGCACTTGCTGGAGGTATCTATGCATA TGTCACCATCGGTCTTCTTGCCAGAATCCGTAAATCCTATGTCAAAGCTGGTGAAATCGCGGAAGAGGTGATTGGCAATGTGAGGACAGTGCAAGCATTT GCAGGAGAGGAAAGAGCAGTAAGATCCTACAGAGACGCATTAAGCAAAACTTACGAGTATGGGAGGAAAGCAGGATTAGCGAAAGGTCTTGGACTTGGGA GTGTCCATTGTGTTCTCTTCTTTTCCTGGTCGTTGCTAGTTTGGTTCGTCAGCATTGTTGTTCACAAGAACATCTCCAATGGCGGCGAGTCCTTCACCAC TATGCTTAATGTGGTCATTTCGGGCCTGGCACTGGGACAGGCAGCTCCGGATATCACTGCATTCGTAAGGGCCAAAGCAGCAGCAGGTCCTATTTTCAAG ATGATAGAGAGGAACACAGTGAGTAAAACCAGCTCAAAAACTGGGAAAAAGTTAACCAAACTGGAGGGTCACATCCAATTCAAGGACGTTACTTTTAGAT ACCCTTCTCGCCCTGATGTAACTATATTCAACAAGCTTCGCCTTGACATACCTTCTGGGAAGATTGTGGCTCTTGTTGGCGGAAGTGGTTCTGGAAAGAG CACAATCATATCCCTGATTGAACGCTTTTATGAGCCACAATCAGGGCAGATACTGATAGATGAGCTTAACATCAAGGACTTCGATTTGAAGTGGCTGAGA GAGCAGATTGGCCTGGTTAATCAGGAGCCTGCCCTGTTTGCCACCAGCATTAGGAAGAATATCCTCTATGGGAAAGATGATGCCACAACTGAAGAGATCA CCCATGCAGCTAAGCTCTCAGAAGCATTGTCATTTATCAACAACCTGCCTGACAGATTTGAAACTCAGGTTGGGGAGAGAGGAGTACAATTATCAGTTGA CCGCTCCAGCATTCTCCTGCAAAATGTTGGTTTGGTAGTTACATCATTCATCATTGCATTCATCCTAAATTGGAGAATCACAGCTGTTGTGTTAGCCACA TACCCGCTGATCATCAGTGGCCACATCAGTGAGAAACTATTCATGCAAGGTTATGGTGGCAATTTGAGCAAAGTGTACCTCAAAGCTAACATGCTGGCTG CTGAGGCTGTAAGCAACATCCGCACTGTTGCAGCATTCTGTGCAGAAGACAAGGTCCTTGACCTTTATGGGCATGAGCTTGTGGAGCCTTCCAAACGTTC ATTTACGCGTGGTCAGATCGCAGGGATATGTTACGGGATATCTCAGTTCTTCATTTTCTCGTGTTATGGACTCGCTTTATGGTATGGTTCTGTTCTGATG GGGAAAGAGCTTGCTAGCTTCAAGTCAGTCATGAAGTCATTCATGGTCTTGATTGTAACAGCATTAGCAATGGGTGAAACTCTGGCATTAGCTCCAGATC TTCTGAAAGGGAACCAAATGGCTGCATCTGTCTTCGAGTTGCTGGACCGTAAATCGCAGATGGGTGGAGATGCTGGAGAAGAGTTGACAAAAGTAGAGGG TAAGGTTGAGTTAAGAGACATCCATTTCATATATCCAGCCAGACCAGAAGTTACCATTTTCAAGGACTTCAGTCTGCAAGTGCATTCAGGCAAAAGTGTG GCTTTAGTCGGCCAAAGTGGCTCTGGTAAAAGTTCTGTTCTTGCTCTCATCCTTCGCTTCTATGATCCAATGGGAGGAAAAGTGCTGATTGATGGAAAAG ACATCAAGAAACTCAACTTGAGATCACTTCGGAGACACATTGGTTTAGTCCAGCAAGAACCAGCTCTCTTTGCAACGTCAATCTATGATAACATCCTGTA TGGGAGAGAAGGGGCCACCGAAGGAGAAGTGATTGAAGCAGCTAAACTTGCCAATGCACATAGTTTCATCAGTGCCCTTCCTCAGGGTTACTCAACGAAA GTAGGTGAACGTGGGGTCCAATTATCTGGTGGCCAGAGGCAAAGGGTTGCAATTGCTCGAGCAGTGCTAAAGAACCCTGAAATCCTGCTGTTAGATGAAG CCACCAGCGCTCTGGATGCAGAGTCAGAGAACATTGTGCAGCAAGCACTGGACAGATTAATGAGAAACCGTACAACTCTCATGGTGGCGCACAGACTGTC AACCATAAAAAATGCAGATCAAATATCAGTCATACAAGATGGAAAAATAATCGAACAAGGGACTCATTCGAGTCTTGTACAGAAGACAGATGGTGCGTAC TTTAAGTTGATCAACCTTCAACAGAAGCAACAAAAGGATGGTCAGCCGTGA
AA sequence Show only first row Show all	>Lus10000910 pacid=23159149 polypeptide=Lus10000910 locus=Lus10000910.g ID=Lus10000910.BGIv1.0 annot-version=v1.0 MAFGSIGACVHGASVPVFFIFFGKLINIIGLAYLFPKEASHKVAKYSLDFLYLSIVIMFSSWIEVACWMHSGERQAAKMRMAYLRALLNQDITLFDTEAS TGEVIAAITSDIIVVQDAISEKAGNFLHYFSRFLSGFIIGFAKVWQISLVTLSIVPFIALAGGIYAYVTIGLLARIRKSYVKAGEIAEEVIGNVRTVQAF AGEERAVRSYRDALSKTYEYGRKAGLAKGLGLGSVHCVLFFSWSLLVWFVSIVVHKNISNGGESFTTMLNVVISGLALGQAAPDITAFVRAKAAAGPIFK MIERNTVSKTSSKTGKKLTKLEGHIQFKDVTFRYPSRPDVTIFNKLRLDIPSGKIVALVGGSGSGKSTIISLIERFYEPQSGQILIDELNIKDFDLKWLR EQIGLVNQEPALFATSIRKNILYGKDDATTEEITHAAKLSEALSFINNLPDRFETQVGERGVQLSVDRSSILLQNVGLVVTSFIIAFILNWRITAVVLAT YPLIISGHISEKLFMQGYGGNLSKVYLKANMLAAEAVSNIRTVAAFCAEDKVLDLYGHELVEPSKRSFTRGQIAGICYGISQFFIFSCYGLALWYGSVLM GKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMAASVFELLDRKSQMGGDAGEELTKVEGKVELRDIHFIYPARPEVTIFKDFSLQVHSGKSV ALVGQSGSGKSSVLALILRFYDPMGGKVLIDGKDIKKLNLRSLRRHIGLVQQEPALFATSIYDNILYGREGATEGEVIEAAKLANAHSFISALPQGYSTK VGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDAESENIVQQALDRLMRNRTTLMVAHRLSTIKNADQISVIQDGKIIEQGTHSSLVQKTDGAY FKLINLQQKQQKDGQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	1.0	0.9934
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	1.4	0.9565
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	1.7	0.9362
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	2.0	0.9273
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	3.2	0.9146
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	3.7	0.8774
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	7.5	0.8681
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	7.7	0.8332
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	8.5	0.8650
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	8.8	0.8816

Compare expression of checked genes

Lus10000910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.