Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20440 1311 / 0 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT2G36390 443 / 5e-142 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT5G03650 433 / 6e-139 SBE2.2 starch branching enzyme 2.2 (.1) AT4G09020 69 / 1e-11 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 65 / 2e-10 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT1G03310 46 / 0.0002 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003675 [exp] 959 / 0 AT3G20440 766 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003674 [exp] 644 / 0 AT3G20440 477 / 7e-163 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10016012 [exp] 424 / 4e-135 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014382 [exp] 424 / 4e-134 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 422 / 4e-134 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10023878 [exp] 422 / 2e-131 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10027725 [exp] 208 / 5e-55 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10017150 [exp] 67 / 3e-11 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10021586 [exp] 67 / 6e-11 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359200 [exp] 1346 / 0 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.005G251000 [exp] 441 / 2e-141 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G115100 [exp] 431 / 2e-137 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G070800 [exp] 73 / 8e-13 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 69 / 2e-11 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 66 / 8e-11 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.002G219900 [exp] 44 / 0.0005 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02806 [flax] [poplar] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain
Representative CDS sequence Show only first row Show all	>Lus10000912 pacid=23182505 polypeptide=Lus10000912 locus=Lus10000912.g ID=Lus10000912.BGIv1.0 annot-version=v1.0 ATGGCGTCTGTCGACTCCTCCACCAAAATTTCTCTCTCCCTTTATCCAACTGAATCGTCTCCTCGTTTTCGTTCCCATTCAAGTTTTCAGAACATCAGTT TCCCCACCAAAATTAGACTGGCAATAAAATGTTCAGCCGCCAACCAGCCGAAACAGCAGCACAGCAAGAAAAGGGATAAAAATGAAGAAGATGAAGATAA AGGAGTAAACCCAGTTGGTTTCCTCACCAGACTCGGCATTACCCATAAACAATTCGCAATCTTTCTCCGTGAAAGGCATAAAGCATACAAGGACCTCAAA GAAGACATTTCCAAGAGACAATTTATGGTTAAGGACCTTGCTTATGGACATCCAGAGCATCGAATGGATTTCATGGACTGGGCACCAGGTGCTCGCTATG GTTCAGTCGTTGGTGACTTTAATGATTGGTCACCAACTGAGAATGCTGCTAGAGAGGGTCTTCTTGGTCATGATGATTATGGTTACTGGTTTATTGTACT TGAAGATAAATTGAGGGAGGGAGAAGAGCCTGATGAACTTTATTTCCAGCAGTACAATTATTTGGAGGACTATGATAAAGGGGATAGTGGCGTTAGCATT GACGAACTCTTCCAGAAAGCAAGGGATGACTACTGGGAACCTGGCGAGGATGAGTACATTAAAAATCGTTTGAAAGTGCCAGCAAAGTTGTATGAGCAAA TTTTTGGCCCTAATGGACCTCAGACATTAGAAAAACTTGAGGAGATACCACTGAAGGATGCAGAGACAAGATATAAGGAGTGGAAAGAACAACATAAAGA TGTCCCACCAAGTAACTTACCTCCTTTCGATGTGATTGATCAAGGAAAGGAGTATGACATTCTTAATGTTGTAAGTGACCCTGCTTGGCTAGCGAAAATT AGCTCCAAGGATCCTCCCTTACCATATTGGCTTGAGATACGTAAAGGAAGGAAAGCATGGTTGAAAAAGTATAGCCCAGCTGTTCCTCATGGAAGCAAAT ACAGGGTCTATTACAACACTCCTGATGGCCAGTTGGAAAGGGTACCTGCTTGGGCTACTTATGTGCAACCAGATGTGAATGGGAAGCAAGCTTATGCCGT TCACTGGGAACCGTCTCCAGAACGTGCTTATAAATGGAAGCAAACAGCCCCAAAAGTTCCGACCTCCTTGCGGATATATGAATGTCATGTTGGGATTAGT GGATCTGAACCGAAAATAGCATCTTTCAGTGACTTCACTGAGAAGGTTCTTCCTCATGTTAAGGAAGCTGGATATAATGCTATTCAGTTGATAGGAGTTG TAGAGCACAAAGATTATTACACAGTTGGTTATAGAGTCACCAACTTCTTTGCTGTTAGCAGTCGTTATGGTACCCCTGATGACTTCAAACACTTGGTTGA TGAGGCACATGGAATGGGATTGCTAGTGTTCTTAGAGATTGTTCATTCGTATGCCGCTGCAGATGAAATGGTTGGGCTGTCATTGTTTGATGGATCGAAC GATTGCTACTTTCACACTGGTAAACGGGGGCATCATAAATTTTGGGGTACCAGAATGTTCAAATATGGCGACCAAGAAGTATTACAGTTTCTACTCTCGA ATCTAAACTGGTGGGTGGAGGAGTATCAAATAGATGGCTTTCAGTTCCATGCACTCTCATCAATGATCTACACACATAATGGCTTTGCTTCGTTTACAGG CGATTTGGAAGAGTACTGTAATCAATACGTTGACAAAGAGGCCTTACAGTATCTGATGTTCGCTAACGAGCTCTTGCATGCTATTCATCCTAACATAATC ACAATTGCGGAAGATGCAACATTCTATCCAGGACTCTGTGATCCAATTTCTCAAGGTGGATTGGGATTCGATTACTATGTAAATTTTTCTGTGCCTGAGA TGTGGTTATCATTTCTTCAGAATGTTCCGGCCCACGAATGGAGTATGAGCAAGATTGTCAGCACATTAATGGACAACAAACACTATGCTGATAAGATGCT AGTGTATGCTGAAAATCATAACCAATCCATCTCTGGAGGGCAGTCATTTGCTGAGATTTTGATTGGCGAAACAGTAGATCGGTCTTCTGACTCTGAGGAA GTGGAGCTTAGAGGTTGTGCACTACTCAAAATGATCAAATTGATTACTTTTACATTAAGTGGCGGGCATGCTTACCTCAATTTCATGGGCAATGAATTTG GGCATCCCAAGAGGGTTGAGTTCCCAGTGTTAAGTAACAACTTTTCTTTTTCACTTGCGAACCGGCAATGGGATCTGCTCGAAAATGTTGGCCTGCATCA GCATTTGTTTTCCTTTGATAAGGATCTAATGCGTCTGGGTGAAAATCAAAAGGCGATTTCAAGAGGTTTGCCAAATGTCCACCATGTGAACGACATGGCA ATGGTATGCTCTTTTCCACTACTCAAGACTGCAAATGAGGAAGAAGGTCCTCTGCTCTTTGTCTTCAACTTCCATCCTATTGATTCCCACCTGACATACA GCGTTGGCGTAGAAGAAGCTGGGGAGTATCAAATCATTCTGAATACCGACGATGACAAGTATGGAGGTGAGGGGACTATAGAGGCGGGAAAATATGTTCA AAAAACGATTACTGGGAGAGTGGACGGTCTTCGATATTGCTTACAGTTGCAGTTGCCTAGCAGAAGTGGCCAGGTTAGTAGATTAGTTGTTGTGGTTTAG
AA sequence Show only first row Show all	>Lus10000912 pacid=23182505 polypeptide=Lus10000912 locus=Lus10000912.g ID=Lus10000912.BGIv1.0 annot-version=v1.0 MASVDSSTKISLSLYPTESSPRFRSHSSFQNISFPTKIRLAIKCSAANQPKQQHSKKRDKNEEDEDKGVNPVGFLTRLGITHKQFAIFLRERHKAYKDLK EDISKRQFMVKDLAYGHPEHRMDFMDWAPGARYGSVVGDFNDWSPTENAAREGLLGHDDYGYWFIVLEDKLREGEEPDELYFQQYNYLEDYDKGDSGVSI DELFQKARDDYWEPGEDEYIKNRLKVPAKLYEQIFGPNGPQTLEKLEEIPLKDAETRYKEWKEQHKDVPPSNLPPFDVIDQGKEYDILNVVSDPAWLAKI SSKDPPLPYWLEIRKGRKAWLKKYSPAVPHGSKYRVYYNTPDGQLERVPAWATYVQPDVNGKQAYAVHWEPSPERAYKWKQTAPKVPTSLRIYECHVGIS GSEPKIASFSDFTEKVLPHVKEAGYNAIQLIGVVEHKDYYTVGYRVTNFFAVSSRYGTPDDFKHLVDEAHGMGLLVFLEIVHSYAAADEMVGLSLFDGSN DCYFHTGKRGHHKFWGTRMFKYGDQEVLQFLLSNLNWWVEEYQIDGFQFHALSSMIYTHNGFASFTGDLEEYCNQYVDKEALQYLMFANELLHAIHPNII TIAEDATFYPGLCDPISQGGLGFDYYVNFSVPEMWLSFLQNVPAHEWSMSKIVSTLMDNKHYADKMLVYAENHNQSISGGQSFAEILIGETVDRSSDSEE VELRGCALLKMIKLITFTLSGGHAYLNFMGNEFGHPKRVEFPVLSNNFSFSLANRQWDLLENVGLHQHLFSFDKDLMRLGENQKAISRGLPNVHHVNDMA MVCSFPLLKTANEEEGPLLFVFNFHPIDSHLTYSVGVEEAGEYQIILNTDDDKYGGEGTIEAGKYVQKTITGRVDGLRYCLQLQLPSRSGQVSRLVVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	0	1
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	1.0	0.9551
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10030285 [exp]	2.0	0.9044
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	4.2	0.8677
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	4.6	0.8938
					Lus10006129 [exp]	5.7	0.8903
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	6.9	0.8737
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	7.1	0.8644
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	7.6	0.8372
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	7.9	0.8746
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	10.2	0.8566

Compare expression of checked genes

Lus10000912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.