Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17010 54 / 4e-08 Mechanosensitive ion channel family protein (.1) AT1G53470 54 / 5e-08 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 49 / 1e-06 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 42 / 0.0003 Mechanosensitive ion channel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012516 [exp] 196 / 1e-60 AT1G78610 336 / 9e-108 mechanosensitive channel of small conductance-like 6 (.1) Lus10022654 [exp] 201 / 4e-59 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 100 / 2e-23 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10038148 [exp] 56 / 1e-08 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 51 / 4e-07 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178900 [exp] 87 / 2e-19 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 55 / 2e-08 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 43 / 0.0001 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000913 pacid=23182506 polypeptide=Lus10000913 locus=Lus10000913.g ID=Lus10000913.BGIv1.0 annot-version=v1.0 ATGGTATTTAGAATAAAAAAGGATACTGAGTTGTTAAAACAGCCCGATCTAGCAATCTTTTTCCATGATGGATTTCCATCGGGATTACAGCGGCCGCCAT CGCAGGGAGCCGAGCTTCGGATTCTCGAGCCAAACGTGGAGGACGAGGAAGATCCCCCCACCGGGCTGATCAACCGGTTCCTCAACCAGCAGAAACACGG CGAGATCGCCCTCGACATGGATCTTGAAATGAACGAGCTCAAGGAACCGAACCAAGGCTCCTCTATCCGCGGCACCTTCGACCCCTCTGTCTCCGACGCC CGCGCCGACGCCGCAGCGGCCGCCGAGTCCCTCCAGCTTTGGAACATCAAGGATAATTATAACATTAGTCATCCTCCTCCGACGGCAGAAGCAGTCATTC GATGTACATCCAACAGCTCGTTCTGGAACCAAGCGAGCTACCTCTCCCGTCTCAAGACGAAATCCCGGCTCCTGGATCCGCCTAAGGACCGGATCGAGAG GATGTCCGGGTTGATTGCGAAATCGGGGCAACTCCGACTGTCAGGGATGTTGAGCAAATCGGGGGACGAGGATGACGAAGACGATCTGGAGCTCGAGGAC TTGCTGGAAGATTTCAATTCGGCGAAAATGAACATCTCCATAATTGTGCAGTGGGTGATTCTTATAGTGATCGTTGTGTCATTGATATGCAGCTTGGTTA TTCCTTCGTTGGAGAAGAAGAGGATAGCTCATCTGAGGCTGCGAAAATGGAAAGTGGATTAG
AA sequence Show only first row Show all	>Lus10000913 pacid=23182506 polypeptide=Lus10000913 locus=Lus10000913.g ID=Lus10000913.BGIv1.0 annot-version=v1.0 MVFRIKKDTELLKQPDLAIFFHDGFPSGLQRPPSQGAELRILEPNVEDEEDPPTGLINRFLNQQKHGEIALDMDLEMNELKEPNQGSSIRGTFDPSVSDA RADAAAAAESLQLWNIKDNYNISHPPPTAEAVIRCTSNSSFWNQASYLSRLKTKSRLLDPPKDRIERMSGLIAKSGQLRLSGMLSKSGDEDDEDDLELED LLEDFNSAKMNISIIVQWVILIVIVVSLICSLVIPSLEKKRIAHLRLRKWKVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	0	1
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	1.0	0.8590
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10021872 [exp]	1.7	0.8474
					Lus10008223 [exp]	2.2	0.8447
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	2.8	0.8467
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	3.5	0.8500
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	5.3	0.8236
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	6.0	0.8116
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	6.6	0.8119
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	7.3	0.8185
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	8.5	0.8220

Compare expression of checked genes

Lus10000913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.