Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12980 204 / 3e-61 Auxin-responsive family protein (.1) AT3G25290 201 / 5e-60 Auxin-responsive family protein (.1.2) AT5G35735 193 / 5e-57 Auxin-responsive family protein (.1) AT2G04850 192 / 1e-56 Auxin-responsive family protein (.1) AT5G47530 181 / 3e-52 Auxin-responsive family protein (.1) AT4G17280 169 / 6e-48 Auxin-responsive family protein (.1) AT3G59070 162 / 1e-44 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 120 / 2e-30 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 99 / 2e-22 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G48750 78 / 4e-16 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021553 [exp] 221 / 1e-69 AT3G25290 165 / 5e-49 Auxin-responsive family protein (.1.2) Lus10001162 [exp] 203 / 2e-60 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 201 / 8e-60 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10012350 [exp] 194 / 2e-57 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10025877 [exp] 188 / 7e-56 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10001734 [exp] 186 / 2e-54 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10002274 [exp] 184 / 2e-53 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10017564 [exp] 174 / 1e-49 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 161 / 1e-44 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024700 [exp] 349 / 2e-117 AT5G47530 199 / 7e-60 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 208 / 7e-63 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.010G156600 [exp] 194 / 3e-57 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.002G222600 [exp] 194 / 3e-57 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1) Potri.014G161700 [exp] 194 / 3e-57 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 191 / 2e-56 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 191 / 3e-56 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.004G006700 [exp] 186 / 3e-56 AT5G35735 156 / 2e-45 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 182 / 4e-53 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 179 / 1e-51 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10000915 pacid=23182507 polypeptide=Lus10000915 locus=Lus10000915.g ID=Lus10000915.BGIv1.0 annot-version=v1.0 ATGTGTCCATTAGCTTCTTCCCTCACTATCTTTTCCTTCTTTTTGTTTATAATCACCCCAAGTATTAATGCGCAACGCATCCCTTGCAGCATTCCCTTCC GCCTCTTCACACAACACAACAACCTCACTCACTGCCGGAAACTCCCTACTCTTGAAGCCGAGCTCGCCTGGCAAATCCTCCCACAAAAACAAAACCTCTC CCAGCAGTTTCACGTCATCTTCGGAGCTAGACTCTCGGACGATGTGGCATGGGTTGCTTGGGGGCTCAACCCACGCCACCCTCAGATGGCAGGTACGCGG GCCATGATCGCCATCCGGGATGCGGAAACCGGGGTGTTCCAGGTTGCCGCGTACAACGTGACGATCAAAACTAGGAGGAGATGCGGGCTGCTTCCGAGTC TGGAGTTGGAGGTGGAGTTTGGAAATGCTTCGATGGAGTACATGAGTGGGATTGATTACTACGCGATGAAGGCTACGGTGGGGATTCCTACGGCGTCATA TGACTTATCGAGGCTACACCACGTGTGGCAGGTCGGGTACAGAGCTGAAGGAATGGAGCCCCGGATCCATCCTGTTTCCAACCTACAACATTTTGACAGT ACGGAGACCATAGATTTGAGGACCGGCGTAGTTCATCAGAGGGCGGGTCAACACCGGCGATATCTTCGAAATGTCCATGGGATCCTAAGTATAATAGGAT GGGGTACAATATTACCGGTAGGAGCTATAATAGCAAGATACTCGAGATTCCCTCTAGAAGTGAGATACCCTCGATGGTTCTTCGCACACAGATGCTGCCA GCTTGTTGGATACAGTCTTGGAAGTGCCGGCTGGATTGTTGGCATTTTCCTCGGCAACTCCACTCAGCTCTACGTCATGAAAATCCACCGTCTTTACGCC ATCTTCATCTTCGCCTTTGCCACCCTCCAAGTTACGGCGCTGTTCTTTAAGCCGGGGAAAGGAGACGAGTACCGCAAGTACTGGAATTTGTACCATCATT TCCTAGGCTACGGCCTGCTTTCAGTTATCATAATCAACATGTTCAAAGGGATTGCTATCTTGAAGCCTAACTACACATGGAAATGGGCTTATATCGGCAT CCTCTCATGTGTAGCCGCCGTCGCACTCGCCATGGAGATATGGAGCTGGATTAAGTTCCTCAACATTAGGAATGATAATAAACGACGAAATCATCATCTT CATCATCATCATCATCATCATGTTCCTATTACAGATGTTAATACCACACCCTGGCGTTCAAATTCAATCATACCACAAGTTTCTGCAGTCGTCGGACCTT CTCTCAGTCCCAATCCTTCGTCATCCACGCAACTGCGTAGCTAA
AA sequence Show only first row Show all	>Lus10000915 pacid=23182507 polypeptide=Lus10000915 locus=Lus10000915.g ID=Lus10000915.BGIv1.0 annot-version=v1.0 MCPLASSLTIFSFFLFIITPSINAQRIPCSIPFRLFTQHNNLTHCRKLPTLEAELAWQILPQKQNLSQQFHVIFGARLSDDVAWVAWGLNPRHPQMAGTR AMIAIRDAETGVFQVAAYNVTIKTRRRCGLLPSLELEVEFGNASMEYMSGIDYYAMKATVGIPTASYDLSRLHHVWQVGYRAEGMEPRIHPVSNLQHFDS TETIDLRTGVVHQRAGQHRRYLRNVHGILSIIGWGTILPVGAIIARYSRFPLEVRYPRWFFAHRCCQLVGYSLGSAGWIVGIFLGNSTQLYVMKIHRLYA IFIFAFATLQVTALFFKPGKGDEYRKYWNLYHHFLGYGLLSVIIINMFKGIAILKPNYTWKWAYIGILSCVAAVALAMEIWSWIKFLNIRNDNKRRNHHL HHHHHHHVPITDVNTTPWRSNSIIPQVSAVVGPSLSPNPSSSTQLRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	0	1
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	4.9	0.9321
					Lus10032860 [exp]	5.2	0.9333
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	6.8	0.8918
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	7.5	0.9210
					Lus10010378 [exp]	8.5	0.9246
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	8.7	0.9234
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	9.2	0.9112
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	10.4	0.8975
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	11.0	0.9205
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	11.8	0.9168

Compare expression of checked genes

Lus10000915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.