Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35810 50 / 2e-06 Ankyrin repeat family protein (.1) AT1G03670 49 / 5e-06 ankyrin repeat family protein (.1) AT3G18670 49 / 5e-06 Ankyrin repeat family protein (.1) AT3G01750 47 / 4e-05 Ankyrin repeat family protein (.1) AT5G04700 44 / 0.0003 Ankyrin repeat family protein (.1) AT5G04680 44 / 0.0003 Ankyrin repeat family protein (.1) AT4G03440 42 / 0.0007 Ankyrin repeat family protein (.1) AT1G34050 42 / 0.0008 Ankyrin repeat family protein (.1) AT5G04730 42 / 0.0009 Ankyrin-repeat containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003282 [exp] 717 / 0 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10016672 [exp] 198 / 3e-55 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10014701 [exp] 179 / 3e-49 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10000489 [exp] 151 / 8e-40 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10014030 [exp] 74 / 1e-13 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10019887 [exp] 68 / 8e-12 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10019888 [exp] 66 / 3e-11 AT3G18670 116 / 2e-40 Ankyrin repeat family protein (.1) Lus10027721 [exp] 50 / 3e-06 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10035567 [exp] 42 / 0.0008 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048832 [exp] 251 / 8e-75 AT3G18670 195 / 2e-53 Ankyrin repeat family protein (.1) Potri.002G048666 [exp] 171 / 1e-45 AT5G04700 181 / 3e-47 Ankyrin repeat family protein (.1) Potri.006G281500 [exp] 72 / 4e-13 AT3G54070 110 / 8e-25 Ankyrin repeat family protein (.1) Potri.011G016400 [exp] 72 / 5e-13 AT3G54070 110 / 8e-25 Ankyrin repeat family protein (.1) Potri.011G019500 [exp] 66 / 2e-11 AT3G18670 105 / 2e-23 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 66 / 5e-11 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G016300 [exp] 64 / 2e-10 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.006G281600 [exp] 64 / 2e-10 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.011G019750 [exp] 62 / 6e-10 AT3G18670 135 / 3e-33 Ankyrin repeat family protein (.1) Potri.011G019200 [exp] 62 / 6e-10 AT3G18670 137 / 1e-33 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000916 pacid=23182504 polypeptide=Lus10000916 locus=Lus10000916.g ID=Lus10000916.BGIv1.0 annot-version=v1.0 ATGGGTTCCACGGCCATCCACTTAGCAGCCGCATTTGGTAATGCTGCCATGTGTGAGTGCATAGCTACCAAAGCTCCACAGCTCATTGGGAGCAGCAATA ACGATGGTGAGACACCCATTTTCCGTGCAGCTACCTCCGGCAAGAAAGACAGTTACTTTTGTCTCCTGGAGAAACTCGAAACCGAACAAGCAGATGACAT CTGTCGGAGAAGGTCTCGTAAAGGTGACACCATTCTTCATGCTGCAATCTCCCGGGAACATTTTGGCAAAAAACACCTACTCAACAAAAGAAATTTGCAA CATTTCCTAGTAGCAGGTGCAATTGTTGATAACCTAGAGCGAACACATGGTTTGCTGAGCTTGAAAGATTCCGATAGGAGTAGTAAATGTCCCGAAAACT ACGCGACATGCATCACCTTCTTTCATCTGATGCAGAAGATCGTAGCTACAGCTTCACGTTCCATTTGTCTAATACTAAAAAACTGCACCAGAAGAAAAAA CAGAGACGAGGATCCAGAGAGCGTCACCCAAAACAATGATATAAATCCAGAATTGATAAGAAGAGGCGACCTAACAGAAATGTTCCCATCCAATTATACA ACAACAATACAACTTTTCAAGCTCATGAGCAAGACACTGCTTATTGTTCTGGGACTAGGACACACGAGAGTATCAAAGATCCAAAGGATAAAAGTGGCGC ACACATGGGCGACACTAGTCCTCAATGCATTGGTGGACAGAGCTTCACTTTACAAGTACCAAGACAGCGGCCGAAAACCTCCCGGTATCGATGACCAGAC ATCTCAGAGCTCTCTAGTCAATAATAAGTTTGTGCCAGACTTGGGAGGTGATGTAGTTTCTTTACTAGTTTATGAACAGATAGGCTGCTACTGCTTGGTA ATGAACAGAAAGAAAGGAGGAAGCCATATTAGTTGCAGCAAAGATGGGGATTACAGAGACAGTGGACAATTTCATCGAAGCCTGTCCAGCGGCAATTCAA GAGTTAAACACGGAGACGAAGAATCTTGTCTGTGTCCTACGAGGAGGAAAAAGAAAAAGCATCTGAGTAAGATGGGTGTCAAAGAGATGGTGCAGAAAAT ACTGGAAACATTTCCTGTTGCCATTCACGACCTGGACTCTAATAATAAGAACGTTGTGCTCTTGGCAGTAGAGAACAAACATGTACAAGTGTTTAAATTT CTTAAGGAGAATGTCATGCTAAAGGAGACTGTATTTGGGCGAGTTGACAAAGATGGGAATAGCGCCTTGCATCTCGCTGCAACTTTTGGAGACTCGAGAC CATGGCTTATTTCGGATACTGGCCTCCAAATGCAGTGGGAACTCAAATGGTACAAGTTTGTGAAGCAATCAATGCCACCCAACTTCTTTCCCCGATACAA CAAGAGAGGTTACACCCCAAAACAGATACTAGCGGAGACACACATACAACTTGCTAAAATGGTAGCGAATGCCTAA
AA sequence Show only first row Show all	>Lus10000916 pacid=23182504 polypeptide=Lus10000916 locus=Lus10000916.g ID=Lus10000916.BGIv1.0 annot-version=v1.0 MGSTAIHLAAAFGNAAMCECIATKAPQLIGSSNNDGETPIFRAATSGKKDSYFCLLEKLETEQADDICRRRSRKGDTILHAAISREHFGKKHLLNKRNLQ HFLVAGAIVDNLERTHGLLSLKDSDRSSKCPENYATCITFFHLMQKIVATASRSICLILKNCTRRKNRDEDPESVTQNNDINPELIRRGDLTEMFPSNYT TTIQLFKLMSKTLLIVLGLGHTRVSKIQRIKVAHTWATLVLNALVDRASLYKYQDSGRKPPGIDDQTSQSSLVNNKFVPDLGGDVVSLLVYEQIGCYCLV MNRKKGGSHISCSKDGDYRDSGQFHRSLSSGNSRVKHGDEESCLCPTRRKKKKHLSKMGVKEMVQKILETFPVAIHDLDSNNKNVVLLAVENKHVQVFKF LKENVMLKETVFGRVDKDGNSALHLAATFGDSRPWLISDTGLQMQWELKWYKFVKQSMPPNFFPRYNKRGYTPKQILAETHIQLAKMVANA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03670			ankyrin repeat family protein ...		Lus10000916 [exp]	0	1
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	8.6	0.6376
					Lus10015310 [exp]	16.6	0.6314
					Lus10021453 [exp]	21.0	0.6267
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10020371 [exp]	23.7	0.5960
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	28.1	0.5985
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	28.3	0.6081
AT1G67540			unknown protein		Lus10006428 [exp]	31.1	0.5695
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	31.7	0.6032
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	32.8	0.5957
AT4G15250	CO	COL11	B-box type zinc finger protein...		Lus10039695 [exp]	39.3	0.6002

Compare expression of checked genes

Lus10000916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.