Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09730 474 / 6e-154 Cysteine proteinases superfamily protein (.1.2) AT4G33620 294 / 1e-87 Cysteine proteinases superfamily protein (.1) AT1G10570 128 / 1e-30 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G60220 123 / 4e-29 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT4G15880 84 / 1e-16 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G48480 67 / 9e-12 Cysteine proteinases superfamily protein (.1) AT4G00690 67 / 1e-11 ULP1B UB-like protease 1B (.1) AT3G06910 66 / 5e-11 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020445 [exp] 321 / 6e-97 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10030867 [exp] 123 / 2e-29 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030622 [exp] 118 / 2e-27 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10023104 [exp] 67 / 4e-11 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 62 / 1e-09 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10035097 [exp] 49 / 2e-06 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105700 [exp] 660 / 0 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 630 / 0 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 379 / 6e-117 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 366 / 2e-113 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.010G040600 [exp] 132 / 6e-32 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.010G180300 [exp] 69 / 2e-12 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.015G090800 [exp] 64 / 8e-11 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.008G221500 [exp] 57 / 4e-08 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G013700 [exp] 49 / 1e-05 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10000917 pacid=23158823 polypeptide=Lus10000917 locus=Lus10000917.g ID=Lus10000917.BGIv1.0 annot-version=v1.0 ATGCAGATTGTACTACTGTTTTTCTTATTTGTGTCTGGCTCTTTGCGTTTTGTCTCTCTGTTCCTCTTAGGCCAAGATGTGGCAGCTCCTCATTTAAGTA CTTTGGTCAATGGTTGTCATGACTGTCTCTCAAAGATTGATTTTTGTCGCACTGCAAGTTCTATTGTTGAGCCGGAGGAAAGAATGACATGTTGTGAGGT ACCTTCACCTGAGAAAGTTCAACTGAATGGTCCTCTTCCAAAATCTATGTTCAATGATGAAGCAGAAATTTGTATTGCAGTTGACTATGTTGTCTATCAG AACAAGTACTCTACTGGATGCACAGTAGTCTTCTCTCGTGACAATATTAAGGTCAGCAGCCTCGCTGTATCTGAAGAAGACCATGAAACCTGTAACCTTG AAAAGAGCATTGATGATATTGTTCATATTGGCAGTGAACGACTTGAAAGGTTTAAAACAGTCTCCGTTAAGCTCCACATATCCTCAACGGGTGCTGGAAA TATTAATGGAACCTCAGGTGTGGAGGAATTGGAGTTTGTGATTGGTGAGCCAGATTGGTCACGAAAATGGCAACAAATCACATCTTTGAATGAGAAATAC ATGAATTTTTGGACGGTGCATGATATTGATTTTCCGGATGAAGTTGATTCTCTTCAGAGAAAGAAATACTTCCCAGACTTTGAGAAGGCTTTTGAAGACG TCATCTATCCAGTAGGGGACTGTGATGCAGTTTCTATTAGCAAGAGAGATGTTGATCTTTTAGAGCCAGAGATTTTCGTTAATGATACAATTATTGACTT TTACATCCAGTATTTGAAGAATCAAATTCCGCCGGAAGAAAAGCATAGATACCATTTTTTCAATAGTTTTTTCTTTCGTAAGCTTGCTGATCTTGATAAA GATCCCTCCAGTGCATTGGATGGTCGGGCTGCCTTTTTACGGGTTCGTAAGTGGACAAGGAAGGTCGATATTTTCGGGAAAACCTACATTTTCATTCCTG TAAATTTTGGTCTTCATTGGAGTTTGCTAGTAATATGCCATCCTGGTGAAATAGCCAGTTTTCCAGATGGAGATTCTGAGAAATCACCCAGAGTACCATG TATTTTGCACATGGATTCCATCAAAGGGACTCATGCAGGTCTCAAAAATCTTGTTCAACGTTATTTATGGGAAGAGTGGACACAGAGGCAGGAAGAGTCA TCAAATTATGTATCTTCTAACTTTTCGAACTTGCGATTTGTCCCCCTAGAGTTGCCACAGCAAGAAAATTCATTTGATTGTGGACTTTTCCTGCTTCACT ACTTGGAACTGTTTTTATCGGAAGCCCCTGGGAATTTCAACCTCTTTAACATCAATAAGTTCTCCACATTTCTAAGCTTGGATTGGTTTCATCCTGTCGA GGCTTCTCTCAAACGCACTCTAATACAGAAACTTGTCTCTGAGCTCTTGGAAAATCGTAATGAAGTAGTTTCTTCTTGTTATGATGGCGCTAAAGGGCAG ATCAAATCTCAAGATGGTAAACAATTGTCATTTGACGTTGTTGCTATGAAACATGCTCCTAGTATAGGTGGTCATGGGAACTCATCCAGTTTCCAAGCTG GCCAGGGGATCGAAATGACTTTGTTAGAGACTTCGTCAATGAGAAATACTGAATGCGGTTGTGATCCCGGGATGGTGCTCAGGGAACTTGTCAATCCAGG AGTTGCAGCTGGAACATTGCTCCCTCATTGTTCATCCTTTGACCAATCATCATCTTATTACCAGCTTAACGGCGTAGTTGGACCAATAGAGGGTGATGCA GAGAATGGTTTTATGGATTTCGGTTCTGGGGATGCTGTTTTCCATCAAATAGACTCCAGCTCTTTTTCACTCCAAGGAGTTGCTGCTGGTGCTTCCTGGA ACGCTGGAGCAACTTCCATGAAGGAAGATGTAGAAGATTCATCATCAGAATCATCAAGTGCTGAGTCGGACGATTCAGATATTGGGATAATTGAAAATTG TTCCTTGGCTAATGGTGAAAAGGAGCAAACATGTCCATTGTTGGATGATAAAACGCATAGTCATGCTTCAACCTCAACTGACATGTTAGAACCTTGTGAT ACCGAAGGTGCGGAAGCATATGCAATCTATTTAAGTGGTGAGCTTTTACGTAGCGAAGAGAAGAGAAGCATAAGCATTGCAGCAGAAGTGGCATTGGAGC AAAATGCAAGTGAGAAGGAAGGTAGTGATGCTGGTGATGATGTCAATGCACTGGAGGAGGACGATGCACATATAGAATCAGACGAGGTGGAGGCTGCTGG GTTAGTGGAGGAGACAGCTGATATAGAATCAAACCCAAAAAGGAATGCGGAAGAGGCTGAGGCAGGAATAGAGGACGAGACGGCTTTGAAAAGGCGACGA GTATCTGAAGAAGATGAGGGAGAAAAGAGAGCTGTGCTCGAAATAGAAGCGCAAGTGAATGATATATAG
AA sequence Show only first row Show all	>Lus10000917 pacid=23158823 polypeptide=Lus10000917 locus=Lus10000917.g ID=Lus10000917.BGIv1.0 annot-version=v1.0 MQIVLLFFLFVSGSLRFVSLFLLGQDVAAPHLSTLVNGCHDCLSKIDFCRTASSIVEPEERMTCCEVPSPEKVQLNGPLPKSMFNDEAEICIAVDYVVYQ NKYSTGCTVVFSRDNIKVSSLAVSEEDHETCNLEKSIDDIVHIGSERLERFKTVSVKLHISSTGAGNINGTSGVEELEFVIGEPDWSRKWQQITSLNEKY MNFWTVHDIDFPDEVDSLQRKKYFPDFEKAFEDVIYPVGDCDAVSISKRDVDLLEPEIFVNDTIIDFYIQYLKNQIPPEEKHRYHFFNSFFFRKLADLDK DPSSALDGRAAFLRVRKWTRKVDIFGKTYIFIPVNFGLHWSLLVICHPGEIASFPDGDSEKSPRVPCILHMDSIKGTHAGLKNLVQRYLWEEWTQRQEES SNYVSSNFSNLRFVPLELPQQENSFDCGLFLLHYLELFLSEAPGNFNLFNINKFSTFLSLDWFHPVEASLKRTLIQKLVSELLENRNEVVSSCYDGAKGQ IKSQDGKQLSFDVVAMKHAPSIGGHGNSSSFQAGQGIEMTLLETSSMRNTECGCDPGMVLRELVNPGVAAGTLLPHCSSFDQSSSYYQLNGVVGPIEGDA ENGFMDFGSGDAVFHQIDSSSFSLQGVAAGASWNAGATSMKEDVEDSSSESSSAESDDSDIGIIENCSLANGEKEQTCPLLDDKTHSHASTSTDMLEPCD TEGAEAYAIYLSGELLRSEEKRSISIAAEVALEQNASEKEGSDAGDDVNALEEDDAHIESDEVEAAGLVEETADIESNPKRNAEEAEAGIEDETALKRRR VSEEDEGEKRAVLEIEAQVNDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	1.7	0.8897
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	2.0	0.8645
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	2.4	0.8690
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	3.0	0.8483
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	3.2	0.8804
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	5.5	0.8636
					Lus10017572 [exp]	6.3	0.8500
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	6.3	0.8432
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	7.7	0.8626
AT5G43680			unknown protein		Lus10004356 [exp]	8.5	0.8090

Compare expression of checked genes

Lus10000917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.