Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35670 142 / 2e-38 IQD33 IQ-domain 33 (.1) AT3G52290 63 / 1e-10 IQD3 IQ-domain 3 (.1) AT3G09710 56 / 1e-08 IQD1 IQ-domain 1 (.1.2) AT3G22190 56 / 2e-08 IQD5 IQ-domain 5 (.1.2) AT5G03040 56 / 2e-08 IQD2 IQ-domain 2 (.1.2.3) AT1G72670 56 / 2e-08 IQD8 IQ-domain 8 (.1) AT2G26410 54 / 1e-07 IQD4 IQ-domain 4 (.1) AT3G59690 47 / 1e-05 IQD13 IQ-domain 13 (.1) AT2G33990 47 / 1e-05 IQD9 IQ-domain 9 (.1) AT3G15050 45 / 4e-05 IQD10 IQ-domain 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002265 [exp] 578 / 0 AT5G35670 186 / 9e-55 IQ-domain 33 (.1) Lus10026486 [exp] 58 / 7e-09 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10015300 [exp] 56 / 2e-08 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10004107 [exp] 56 / 3e-08 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10019916 [exp] 55 / 5e-08 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 54 / 7e-08 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 54 / 1e-07 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10041419 [exp] 53 / 2e-07 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10025425 [exp] 50 / 9e-07 AT2G33990 243 / 1e-79 IQ-domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161000 [exp] 266 / 2e-86 AT5G35670 271 / 2e-87 IQ-domain 33 (.1) Potri.016G086300 [exp] 65 / 2e-11 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 60 / 1e-09 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.009G015800 [exp] 57 / 1e-08 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.001G215200 [exp] 56 / 1e-08 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.019G095700 [exp] 54 / 6e-08 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.010G218100 [exp] 54 / 7e-08 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.013G127200 [exp] 53 / 2e-07 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.011G153400 [exp] 51 / 9e-07 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.003G042700 [exp] 49 / 2e-06 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000919 pacid=23170810 polypeptide=Lus10000919 locus=Lus10000919.g ID=Lus10000919.BGIv1.0 annot-version=v1.0 ATGAATTCTTTCCTGGTTTTGATATTTTTATTTCCACAGGGAAATAGAAGCAATGAGAAGAAGAGGTGGAGTGTTGTGAGATTATACCTTTGTGGGGATG AGGAGTTTGACTCGGTTCTTGCAGAGGAGGATTCTGCTTCTGTGAAGAGCTCGGAGGCCACAATTGCTTCCAATCAGCCTTATGCATCATCGAATGGAGA GATGATCGAACATACAATGTTGTATCAGCAGGAGGAGGATGCAGCAATTATCATCCAGGCAGCATTCAGAAGGCTCATGGCAAGATGTCGAGACGGGGAG GCGAAAATGGAGGATGATGAACAGCAGGAGATGCAAGAAATCGAAAGTGGAAGTCCTGGTAAATTTTCTGTGAGTACATCTATTGAGGTTCAAACTGGGA ACTCAATAGATGTGCTCTCAACAACAGAAGAGAACAGTGGTGCTCACTGTAATAACCAGTTACAGAAGAAAACCAGAACTCAGATTTCAAGATCAAAGGA AGATTGGGATGACAGCACACTTAGCAGCAACGTGTTAAGAATGAGGATTCAGAACAGGCTCGAAGCCACAAACCGGCGAGAAAGAGCGCTTGCTTATGCA TTCTCACAACAGCTGCGGATCTGCTCAAGGAATAAGCAAGAAAGACCTGACTGTAAACAATCCAACAAGAGTTGGCATTGGCTCGAACGGTGGATGGCAA CCAGAGTTCCAGACTTCTCATTAGAAAGCCATTCAAGCAAGCAACTTGAAGAGAAAGCAAACAACTTTCACACAGAGGCTGTTGGAAAAAAAGGCAGATA TTTCGATTTAGCAGTAGAAGAAAAGGAGAGTTGCGGCTCAAACGACGTACCTGTCCTTGCAGAGAGCTTCCCAGTTAAAAATGTAGAAACCAGGAAGAAA ACCAAGCCTGGAAGAAACATATCAAGGAGGAAAACAGTTCCAAGCCACTACCAATGTCCCAAAGAGCCAACGGTAACCAACTCACCGGTACAATCTCGAA CAATAATGCACAAAAAAGATCGGCAGCTACAACGATCAAACAGCAACAGAGAAATCAAGTGCATAGATGCTTCATCGACATTGTAG
AA sequence Show only first row Show all	>Lus10000919 pacid=23170810 polypeptide=Lus10000919 locus=Lus10000919.g ID=Lus10000919.BGIv1.0 annot-version=v1.0 MNSFLVLIFLFPQGNRSNEKKRWSVVRLYLCGDEEFDSVLAEEDSASVKSSEATIASNQPYASSNGEMIEHTMLYQQEEDAAIIIQAAFRRLMARCRDGE AKMEDDEQQEMQEIESGSPGKFSVSTSIEVQTGNSIDVLSTTEENSGAHCNNQLQKKTRTQISRSKEDWDDSTLSSNVLRMRIQNRLEATNRRERALAYA FSQQLRICSRNKQERPDCKQSNKSWHWLERWMATRVPDFSLESHSSKQLEEKANNFHTEAVGKKGRYFDLAVEEKESCGSNDVPVLAESFPVKNVETRKK TKPGRNISRRKTVPSHYQCPKEPTVTNSPVQSRTIMHKKDRQLQRSNSNREIKCIDASSTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	0	1
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10002265 [exp]	1.0	0.9063
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	2.8	0.8753
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	4.9	0.8732
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	4.9	0.8357
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	6.3	0.8091
AT5G50335			unknown protein		Lus10008207 [exp]	8.1	0.8293
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	12.4	0.7969
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	12.8	0.7783
AT4G35980			unknown protein		Lus10009388 [exp]	13.3	0.8162
					Lus10029254 [exp]	16.3	0.7835

Compare expression of checked genes

Lus10000919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.