Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04520 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) AT5G35680 191 / 8e-64 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033806 [exp] 201 / 3e-67 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10014627 [exp] 201 / 3e-67 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002264 [exp] 198 / 2e-66 AT2G04520 248 / 6e-86 Nucleic acid-binding, OB-fold-like protein (.1) Lus10020713 [exp] 136 / 8e-42 AT2G04520 169 / 4e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029827 [exp] 134 / 5e-41 AT2G04520 168 / 9e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10042438 [exp] 95 / 9e-26 AT2G04520 100 / 5e-28 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034249 [exp] 42 / 4e-05 AT2G40780 197 / 4e-65 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10029014 [exp] 40 / 0.0002 AT2G40780 199 / 4e-66 Nucleic acid-binding, OB-fold-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219200 [exp] 199 / 9e-67 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G160900 [exp] 196 / 1e-65 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G031700 [exp] 165 / 3e-53 AT2G04520 176 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G093801 [exp] 77 / 1e-19 AT2G04520 76 / 2e-19 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10000920 pacid=23170809 polypeptide=Lus10000920 locus=Lus10000920.g ID=Lus10000920.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACAAAGGAAAAGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAGGCTGATGACGAGAAGCGAGAGCTGATCTTCAAGGAAGACGGGCAGG AATACGCTCAGGTGATGCGAATGCTTGGGAATGGACGCTGCGAGGCCACTTGCATCGATGGGGTGAAACGCCTGTGCCATATCCGTGGCAAAATGCACAA GAAGGTCTGGATCGCGGCTGGCGATATCATCCTTGTAGGGCTGAGGGATTATCAAGATGACAAGGCTGATGTTATCCTGAAGTACATGCCTGACGAGGCC AGGCTTCTCAAGGCCTATGGCGAGTTGCCCGAGAATATCCGTCTCAACGAGGGTATTGCTGGTGGTCTTGATGAGGAGGATGATGGTGCTGGTGATGACT ACATCGAGTTTGAAGACGAAGATATCGACAAGATCTAA
AA sequence Show only first row Show all	>Lus10000920 pacid=23170809 polypeptide=Lus10000920 locus=Lus10000920.g ID=Lus10000920.BGIv1.0 annot-version=v1.0 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVMRMLGNGRCEATCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA RLLKAYGELPENIRLNEGIAGGLDEEDDGAGDDYIEFEDEDIDKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	0	1
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	1.4	0.9117
AT1G29850			double-stranded DNA-binding fa...		Lus10004609 [exp]	3.7	0.8782
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	3.9	0.9120
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	3.9	0.8961
AT4G27130			Translation initiation factor ...		Lus10031550 [exp]	5.5	0.8624
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	7.1	0.8751
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	7.3	0.8884
AT5G09830			BolA-like family protein (.1)		Lus10020861 [exp]	7.4	0.8864
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	7.7	0.8782
AT3G52230			unknown protein		Lus10038643 [exp]	9.4	0.8716

Compare expression of checked genes

Lus10000920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.