Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04550 307 / 1e-105 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G23610 95 / 4e-23 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 77 / 4e-17 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G55270 72 / 5e-14 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT5G23720 53 / 1e-07 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002263 [exp] 499 / 0 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10021940 [exp] 90 / 9e-22 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 80 / 1e-17 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10003291 [exp] 72 / 8e-14 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10006229 [exp] 70 / 3e-13 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 66 / 3e-13 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10030324 [exp] 69 / 4e-13 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10036877 [exp] 69 / 6e-13 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 61 / 2e-10 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160500 [exp] 389 / 2e-137 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.010G033000 [exp] 86 / 3e-20 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.010G210900 [exp] 72 / 7e-14 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 71 / 8e-14 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.015G105000 [exp] 60 / 6e-10 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.012G105800 [exp] 52 / 2e-07 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.006G040300 [exp] 51 / 4e-07 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 50 / 8e-07 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.016G110700 [exp] 43 / 0.0002 AT3G09100 914 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.006G096000 [exp] 41 / 0.0006 AT3G09100 948 / 0.0 mRNA capping enzyme family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10000921 pacid=23170817 polypeptide=Lus10000921 locus=Lus10000921.g ID=Lus10000921.BGIv1.0 annot-version=v1.0 ATGATGAGGAAGAGGGAAAGGGAGAACCCTTGCGGGATTTGCGGGCACTACCACAAGTACGAGGAAGGAGAAGTTTGCGGGATATGCGGCCACCGCTTGC CGGATTCTTCCTCCGCCTCCGCCGCCGGCGGCGGCAATCCCTCCGTTCACATCAGCGCTTTCCCTTCCGAGATCGTCCCGGACTTCCTTTACCTAGGTAG CTACGACAACGCTGCTAGGTCCGAGCTGCTTAAAACCCAGGGGATCTCCCGGATTCTCAATACAGTACCTGCTTGTCAAAACCTTTACAAGAACTCCTTC ACCTATCATTGTCTCCAAGATGACAAAACTCTACAGTTCGATGAAGCTATACAAATCCTAGAACAATGCGAGAGGGAAAAAGCTCGTATCCTCGTGCACT GCATGTCCGGAAAGAGTAGGTCTCCGGCTATCGTGATGGCTTATTTGATGAAGTCCAAAGGATGGAGGCTGGCGCAAAGTTACCAGTGGGTTAAAGAACG AAGGCCTGCTGTTGAATTGACCGAAGGGGTGCACCAGCAGTTGCAGGAGTACGAGCAGAGGCTATTCTCGTCAATTGACAACAAAAATCCTCCGGAAAAT TTCGTATTCCCGCCACCAGCAGGCATCCCATCTTTCAGTTTCGGCTTCCAAAAGGCAGCCAACGATACCGCACCTTCTCCACCTACATTTCCTTCTGGCG CTACCTCGATCTTCGGTCAACCACCGGACATCCCTCCAATGGAGTTCAAATTCGGTGCCGGCAGCAGCAGTCCATTTGGCTCAAATCCGAAGAGCTCTAG CAATGGAGACATCTCAATGGATACATGA
AA sequence Show only first row Show all	>Lus10000921 pacid=23170817 polypeptide=Lus10000921 locus=Lus10000921.g ID=Lus10000921.BGIv1.0 annot-version=v1.0 MMRKRERENPCGICGHYHKYEEGEVCGICGHRLPDSSSASAAGGGNPSVHISAFPSEIVPDFLYLGSYDNAARSELLKTQGISRILNTVPACQNLYKNSF TYHCLQDDKTLQFDEAIQILEQCEREKARILVHCMSGKSRSPAIVMAYLMKSKGWRLAQSYQWVKERRPAVELTEGVHQQLQEYEQRLFSSIDNKNPPEN FVFPPPAGIPSFSFGFQKAANDTAPSPPTFPSGATSIFGQPPDIPPMEFKFGAGSSSPFGSNPKSSSNGDISMDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Lus10000921 [exp]	0	1
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10018581 [exp]	7.9	0.8992
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	8.1	0.9088
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	9.0	0.9152
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	10.0	0.9053
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	11.5	0.9008
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	13.6	0.9056
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	14.0	0.8907
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	15.9	0.8855
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	17.2	0.8931
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	18.5	0.8575

Compare expression of checked genes

Lus10000921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.