Plant FIBer expression Database

Lus10000922 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35690 548 / 0 unknown protein
AT1G55915 66 / 3e-11 zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002262
[exp]
941 / 0 AT5G35690 585 / 0.0 unknown protein
Lus10016607
[exp]
72 / 5e-13 AT1G55915 431 / 4e-150 zinc ion binding (.1)
Lus10037827
[exp]
42 / 0.0009 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G160400
[exp]
672 / 0 AT5G35690 440 / 2e-146 unknown protein
Potri.011G092900
[exp]
62 / 5e-10 AT1G55915 429 / 5e-149 zinc ion binding (.1)
Potri.002G244500
[exp]
49 / 6e-06 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09409 PUB PUB domain
CL0126 Peptidase_MA PF08325 WLM WLM domain
Representative CDS sequence
>Lus10000922 pacid=23170808 polypeptide=Lus10000922 locus=Lus10000922.g ID=Lus10000922.BGIv1.0 annot-version=v1.0
ATGATCAGTGTGGCCGTTACGTGGAGAGGGAAAAGGTACGGGGTGGAAATCAATGGCGGTGCTTGTCTGAAGGACCTTGGAGACGAGCTACAGAAGTTGA
CCGATGTCGAGCCAGATACCATGAGGCTTATTGTCCCGCAAGGCAAAAGTTCGAAGCTTGTGTATCCTTTCTCCATCGAACATTCGAACCTGACTTTACT
CGAAGCCTCCATTTCCGAGGGGAAGCCTATCAGGATGATGGGAGTGTTTAAGGATGAAGTTGACAGGATCTTACAGAACGCAAAAGTTGACATGAGAATT
GCTGGTTTCGACGAGGAAGGAAGAAGAATGAGACAGCGGACATCAGTTGGACGTCCTTCGGTGCCTAAGCTTCCGCAAGGATCTTACATCTTTTGTGATT
TCCGCACTCTCTCCATTCCAGGGATTGAGTTGAATCCTCCAGCTTCCGAGGCATTAAAAAGGATGCACATGCTTGCTGCTGATCCTGGAATTATTGCAAT
AATGAACAAGCATCGTTGGCGCGTGGGAATAATGACTGAGATGGCTCCAATTGGTTATGTTGGTGTGAGCCCCAAATGCATCCTTGGGTTTAACAAGAAC
CACGGCGAGGAGATATCTCTCCGGCTTAGAACTGATGATCTCAAAGGTTTTAGGAAGTACGATAGCATCAAGAAAACGCTTTTGCATGAACTTGCTCACA
TGGTTTTCTCAGAACATGATGCAGACTTTTATGCTCTGGATAAGCAGCTGAATCAAGAAGCTGCGACGTTGGATTGGACGAAGGCAAAGGGGCATACTTT
AAGTGGAGTCAGAAATTCTGCTGATTATGAAGACGACTTCGACGATGTCAGCTACATAGTTTCATCACAGAAACTCGGAGGGAATGTATCAGATCAACTG
GATAGTGCCCGCGCGTCTTCAGTGGCTGCTGCCTATCGTCGTTTAGCAAATGTCTCCGAGGCATCTGAGATGGAAGAACCGGATCCTGATGATTCGACTG
GTGTGGAAAATGTTCATGGAATCGGTTTGGTTATCAATAATGAGCATGATCCTGATGAACAATCCCTCAATCATAACAAGGATGACAGTGAACCTGATCC
TGATGACCAGTCTTTTGGCAGTAAGAAGGGGGAACCTGATCCTGATGATCAGTCTTTTGGTCGTAAGAATGAGGAACCTGATCCTGATGATTCCTTGGGG
AACAATAACCAAGCAATGGAAGACCAAAAGAGGGGGCGTAAAGCCACAAAAAGCTCTCCCGAACCCGATCCAGATGATCACGAAGAATCTGTAAGGATGG
AGGGTGATTCTGGAGTACTCCTTTCCCAAGAAACAGCCATGATGCAAATCGATGAGCCTGAACCAGACTACGAAGAATTGCGAAGGATACAAGATCCAGT
TACAGCTGTTTGCAGGCGCCTTACAAAGGCAATCCAGTCTCTGCAAGCTGAAGTGAGTAATCCCCTTGAAGCATCAGCTGCTTTGCAGACTCTTTCCAAA
ATAGTCAGGAACGCCATCGAGCATCCTAACGAGATGAAGTTCAGGAAGCTAAGAAAGGCGAATCCCGTTATCCAGAAGAACATTGCTGCTCACAAACCTG
CAATGCAGATCCTGGAAGTAGCTGGATTTGTCGAAGAAACTGTTCTTGATGAAAGAGGAAATCCCGACACTTACTTGACCTTGAAGCGAAATGACCCGGG
TTTGCTGTGGCTTGCTAAATCATCCCTTGAGGAGGCATCATGA
AA sequence
>Lus10000922 pacid=23170808 polypeptide=Lus10000922 locus=Lus10000922.g ID=Lus10000922.BGIv1.0 annot-version=v1.0
MISVAVTWRGKRYGVEINGGACLKDLGDELQKLTDVEPDTMRLIVPQGKSSKLVYPFSIEHSNLTLLEASISEGKPIRMMGVFKDEVDRILQNAKVDMRI
AGFDEEGRRMRQRTSVGRPSVPKLPQGSYIFCDFRTLSIPGIELNPPASEALKRMHMLAADPGIIAIMNKHRWRVGIMTEMAPIGYVGVSPKCILGFNKN
HGEEISLRLRTDDLKGFRKYDSIKKTLLHELAHMVFSEHDADFYALDKQLNQEAATLDWTKAKGHTLSGVRNSADYEDDFDDVSYIVSSQKLGGNVSDQL
DSARASSVAAAYRRLANVSEASEMEEPDPDDSTGVENVHGIGLVINNEHDPDEQSLNHNKDDSEPDPDDQSFGSKKGEPDPDDQSFGRKNEEPDPDDSLG
NNNQAMEDQKRGRKATKSSPEPDPDDHEESVRMEGDSGVLLSQETAMMQIDEPEPDYEELRRIQDPVTAVCRRLTKAIQSLQAEVSNPLEASAALQTLSK
IVRNAIEHPNEMKFRKLRKANPVIQKNIAAHKPAMQILEVAGFVEETVLDERGNPDTYLTLKRNDPGLLWLAKSSLEEAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G35690 unknown protein Lus10000922
[exp]
0 1
AT5G22000 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) Lus10008447
[exp]
3.5 0.8671
AT1G43130 LCV2 like COV 2 (.1) Lus10018869
[exp]
7.8 0.8843
AT5G40670 PQ-loop repeat family protein ... Lus10014572
[exp]
8.0 0.8718
AT3G43230 RING/FYVE/PHD-type zinc finger... Lus10039922
[exp]
12.6 0.8841
AT1G01490 Heavy metal transport/detoxifi... Lus10007911
[exp]
14.1 0.8697
AT1G51760 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IA... Lus10006864
[exp]
14.6 0.8809
AT5G16880 Target of Myb protein 1 (.1.2.... Lus10040912
[exp]
14.7 0.8618
AT1G77220 Protein of unknown function (D... Lus10018920
[exp]
16.5 0.8618
AT1G34190 NAC ANAC017 NAC domain containing protein ... Lus10006054
[exp]
19.0 0.8482
AT4G15420 Ubiquitin fusion degradation U... Lus10015140
[exp]
27.4 0.8244

Lus10000922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.