Plant FIBer expression Database

Lus10000923 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14010 48 / 9e-08 RALFL32 ralf-like 32 (.1)
AT2G32885 42 / 4e-06 Rapid alkalinization factor (RALF) family protein (.1)
AT2G34825 40 / 5e-05 RALFL20 RALF-like 20 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002259
[exp]
110 / 1e-31 AT2G34825 49 / 1e-08 RALF-like 20 (.1)
Lus10006213
[exp]
43 / 5e-06 AT1G35467 42 / 3e-06 RALF-like 5 (.1)
Lus10002260
[exp]
44 / 9e-06 AT4G11510 47 / 8e-07 ralf-like 28 (.1)
Lus10002261
[exp]
44 / 1e-05 AT4G11510 / ralf-like 28 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G059800
[exp]
39 / 0.0002 AT4G14010 70 / 1e-16 ralf-like 32 (.1)
Potri.014G131800
[exp]
37 / 0.001 AT4G15800 123 / 1e-37 ralf-like 33 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05498 RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence
>Lus10000923 pacid=23170805 polypeptide=Lus10000923 locus=Lus10000923.g ID=Lus10000923.BGIv1.0 annot-version=v1.0
ATGTCGAAGATGTTGAAAATTGTCACTGTTTCTTCCATTCTAGTAATTTTATTGTGTGTAGTCACTGTAAGAGAAACGGAAGCGAATGTAATCGAGTATC
CGACTATAAGGAAAAACAACCCAAAATGTTCAGGCAGCGCCACGGGACAATGCGCACCAAAACCGGCTAATCCATATGAAAGAGGTTGTAGCCCGAACAC
CAAATGTCGCGGGGACGAAGTTGAAGATGGGGAGAATAATAAGGAACGAGAGGAAGAAGCCAAGAAGGCGACCGGCGGCGTGGAAAAAGACGAGAGAAAA
GATGGCGATGAGGAACACAATAACGAGAAAGAGGAAAGTGAAAAGAAGGACCGTAAAAGAAGCAGCGACAAAGATAAAAAGGAGAAAGACGAGGCGAAGA
AGAACAAAGAGAACGAGCTTTGA
AA sequence
>Lus10000923 pacid=23170805 polypeptide=Lus10000923 locus=Lus10000923.g ID=Lus10000923.BGIv1.0 annot-version=v1.0
MSKMLKIVTVSSILVILLCVVTVRETEANVIEYPTIRKNNPKCSGSATGQCAPKPANPYERGCSPNTKCRGDEVEDGENNKEREEEAKKATGGVEKDERK
DGDEEHNNEKEESEKKDRKRSSDKDKKEKDEAKKNKENEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G32885 Rapid alkalinization factor (R... Lus10000923
[exp]
0 1
AT5G49290 ATRLP56 receptor like protein 56 (.1) Lus10027821
[exp]
4.6 0.8962
AT3G14880 unknown protein Lus10039196
[exp]
5.8 0.9167
AT4G02780 ATCPS1, ABC33, ... GA REQUIRING 1, CPP synthase, ... Lus10006917
[exp]
8.1 0.9165
Lus10006918
[exp]
10.5 0.9162
Lus10013380
[exp]
11.4 0.8365
Lus10007508
[exp]
12.2 0.9162
AT1G04670 unknown protein Lus10004041
[exp]
13.6 0.9162
Lus10027066
[exp]
14.9 0.9162
AT5G14180 MPL1 Myzus persicae-induced lipase ... Lus10015158
[exp]
16.1 0.9162
AT5G60010 ferric reductase-like transmem... Lus10019390
[exp]
17.2 0.9162

Lus10000923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.