Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04750 343 / 7e-114 Major facilitator superfamily protein (.1) AT1G54730 336 / 3e-111 Major facilitator superfamily protein (.1.2.3) AT2G48020 320 / 3e-105 Major facilitator superfamily protein (.1.2) AT3G05160 303 / 2e-98 Major facilitator superfamily protein (.1.2) AT3G05165 302 / 7e-98 Major facilitator superfamily protein (.1.2.3.4.5) AT3G20460 295 / 7e-95 Major facilitator superfamily protein (.1) AT1G08930 293 / 3e-94 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05150 291 / 1e-93 Major facilitator superfamily protein (.1) AT5G27360 290 / 3e-93 SFP2 Major facilitator superfamily protein (.1) AT5G18840 286 / 2e-91 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002258 [exp] 650 / 0 AT1G54730 319 / 2e-101 Major facilitator superfamily protein (.1.2.3) Lus10033795 [exp] 482 / 2e-168 AT4G04750 360 / 3e-120 Major facilitator superfamily protein (.1) Lus10018957 [exp] 453 / 4e-156 AT4G04750 326 / 2e-106 Major facilitator superfamily protein (.1) Lus10033815 [exp] 385 / 5e-131 AT1G54730 305 / 8e-100 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 325 / 2e-106 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 296 / 1e-95 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035356 [exp] 293 / 9e-94 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 292 / 9e-94 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 293 / 2e-93 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027500 [exp] 343 / 1e-113 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 326 / 3e-107 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 322 / 2e-105 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 318 / 3e-104 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 316 / 4e-103 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 311 / 3e-101 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.014G136600 [exp] 300 / 6e-97 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 294 / 1e-94 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 291 / 2e-93 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 258 / 1e-80 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10000924 pacid=23170816 polypeptide=Lus10000924 locus=Lus10000924.g ID=Lus10000924.BGIv1.0 annot-version=v1.0 ATGGCGAAGACGAGGAAGAAGGAAGAGGAATTAGGAAGCAGCATTACTGAAGAGCTTCTTCTTAACAATGCCGCCGCCGCCGCCGCCGGAAGGTCAGAAG TCGACGAAGAACAGAGTACTTCTTCGCCTTTCACTGCAACCCTTCTGCTCAGCCTTTTCTCCGTTGCTTGTGGCTGCTGCTCAACTGGCTGCACTGTGGG TTACTCTTCTCCTGTTGAGTACCAAATCCTTCAAGAACTTGGTCTCTCTGTTGAAGAGTACTCAGTTTTTGGGTCGATGATGATCGTTGGAGGGCTGGTG GGTTCCATAGGAGGTGGGAAGATTGCAGAACTCGTTGGGAGGAAACGTACAATCATGGGTTTGGATGGGCTGTTCATCGTTGGATGGGTGATGATTGCAA CTGCAAAGGGGGCCTTGCAACTTGACTTTGGAAGGCTGTTACTTGGGATTGCATCAACCATCACTCTTTATCTGGCACCAGTTTATGTTGCAGAGATCGC ACCGAGGAACTTAAGGGGAGCTGCAGTCTCAGTCACTCAGTTGACTATGATTTGCAGCATTTCGCTCACATTCCTAGTCGGCTCCTTCATCAACTGGCGT GCCGTGGCACTAATAGGAGCAGCTCCAGGTTTAGTACAGCTACTCCTCACATTCTTCATTCCTGAGTCCCCTAGGTGGCTGGCTAAAAGTGGAAAGGAGA AGGAGTTTGAAGCTGCATTGGTAAGGCTTAGAGGAGCAAATGCTGATATTTCATGGGAAATTAATGAAATCAAGGATTATACAGAAACGATCCAGTCCTT ATCGAAGGACAGCAGCAGCGTATTCGATTTGTTTCAGAAACAGTATGCACTTCCTTTAATAGTCGGAAATGGGCTAATGGTGCTGCAACAGTTGTCGGGG TTGAACTCGTACACATTGTACACCGGTGCTATCTTCTCCTCTGCAGGAATCCCAAATACTACAGGGTTCCTGACAGTGTCAGCTTTCCAGTTTGTAGGCA CTGTGTTTACTGCTCTAGCTATGGACAGATATGGAAGAAGACCACTGTTACTAGTTACAGTGATTGGAACATTCTTCGGAAGCTTGCTTACTGCACTGTC ATTCATCCTACACGGCCATGAAGGATGGAGTAAAGTGACTCCAATTCTGGCACTACTGAGTGTTCTGGTGTACTCAGGGTCCATGTCAGTTGGGAATGGG ATCCCTTGGATAATCATAGCCGAGATATTCCCTCTAAACATAAAAGGATCAGCTGGGACAATGTGCTGCCTTTCCTTCAACCTTTCTTCTCTGTTGGTCT CATTCACTTTCCAATCTTTGCTTCAATGGAGCCCTTTGGGTGAGAAGAGCCGCTATCTAGCCCATCTCCGAGTTCACAACTTTGATAATATGTAA
AA sequence Show only first row Show all	>Lus10000924 pacid=23170816 polypeptide=Lus10000924 locus=Lus10000924.g ID=Lus10000924.BGIv1.0 annot-version=v1.0 MAKTRKKEEELGSSITEELLLNNAAAAAAGRSEVDEEQSTSSPFTATLLLSLFSVACGCCSTGCTVGYSSPVEYQILQELGLSVEEYSVFGSMMIVGGLV GSIGGGKIAELVGRKRTIMGLDGLFIVGWVMIATAKGALQLDFGRLLLGIASTITLYLAPVYVAEIAPRNLRGAAVSVTQLTMICSISLTFLVGSFINWR AVALIGAAPGLVQLLLTFFIPESPRWLAKSGKEKEFEAALVRLRGANADISWEINEIKDYTETIQSLSKDSSSVFDLFQKQYALPLIVGNGLMVLQQLSG LNSYTLYTGAIFSSAGIPNTTGFLTVSAFQFVGTVFTALAMDRYGRRPLLLVTVIGTFFGSLLTALSFILHGHEGWSKVTPILALLSVLVYSGSMSVGNG IPWIIIAEIFPLNIKGSAGTMCCLSFNLSSLLVSFTFQSLLQWSPLGEKSRYLAHLRVHNFDNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04750			Major facilitator superfamily ...		Lus10000924 [exp]	0	1
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	8.6	0.9298
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	8.8	0.9033
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	9.8	0.9088
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	11.7	0.9241
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	12.2	0.9130
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	15.0	0.9084
					Lus10000100 [exp]	16.1	0.9227
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	17.2	0.8881
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	20.5	0.9038
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	28.9	0.9126

Compare expression of checked genes

Lus10000924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.