Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54710 828 / 0 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 658 / 0 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT5G54730 286 / 5e-83 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT5G05150 54 / 5e-07 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT2G40810 50 / 4e-06 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 50 / 5e-06 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT3G62770 49 / 2e-05 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002257 [exp] 1644 / 0 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10018960 [exp] 1233 / 0 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 986 / 0 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10035835 [exp] 454 / 1e-145 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 447 / 2e-142 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10033818 [exp] 216 / 6e-63 AT1G54710 83 / 2e-17 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10029900 [exp] 50 / 5e-06 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 50 / 1e-05 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 49 / 2e-05 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028200 [exp] 983 / 0 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 974 / 0 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.011G132700 [exp] 482 / 1e-154 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 468 / 2e-149 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.019G062800 [exp] 52 / 1e-06 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.014G132300 [exp] 50 / 8e-06 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 47 / 7e-05 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 43 / 0.0008 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12490 [flax] [poplar] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Lus10000925 pacid=23170811 polypeptide=Lus10000925 locus=Lus10000925.g ID=Lus10000925.BGIv1.0 annot-version=v1.0 ATGAAGAATAACAACAAGGGAAACAACAGCAGCAATGGCTTCTTTCCCAGCTCTCTGAAATTCCTTTCCTCCTGTATCCAGACCGCTTCTTCATTTCCTC CTGTATCAAGACCGCTTCTTCCGGCGTCCGGTCAGCTGCCGCTTCGATCTCCGGCGATAATCAAGGCGGGATTAAGGACCAGTTGTGGCCTTTCTGGTTG GTGTGAGCAGGTACTCTGGGCCTCATTTGACAAACTTCAGATTAGTCCGTCATCCTACAGAAATGTTCTCCTACTTGGATACTCGAATGGCTTCCAAGTG ATTGATGTCGAAGATGCGTCTGGTGTTACTGAGCTTGTTTCAAGACGGGATGATCCAGTCACCTGTTTACGAATGCAGCCACCTCCTGCTAAGGCTGACG GCTGTGAGGGATTTAGAGCTGCACATCCTTTGGTCTTAGTTGCCTGTCAGGAATCAGATACACCCCCTGTTGTTATCAGTGGGAAAGATGGTTTAGCTCG AGATAGCTCCAATGAGCATCAAGCAGGGAACTTTGCCACTGTAGTTCGTTTTTACTCTCTGAAATCCCACAACTATGTTCATGTTCTAAAATTCATGTCA CCTGTTTTCATGGTTAGATGCAGCCCTCGTATAGTTGCAGTTGGTCTCGCCACACAGATATATTGCTTTGATGCTCTCACTCTAGAGAACAAGTTCAGTG TGCTCACATATCCTGTCCCGCAATTGGCTGGCCAAGGAGGGATTATGGCTAACCCTGGATATGGCCCAATGGCTGTGGGGCCTAGGTGGATAGCTTATGC TTCTGACAATCAATTGGTATCTAATACTGGCCGCCTAAGTCCACAATGTCTTACGCCTTCCATGGGCGTCAGTCCATCAACTTCACCTGGCAATGCCAAT CTAGTAGCTCGCTATGCCATGGAATCTAGCAAGCATTTAGCTAGTGGGTTGATGAGTTTAGGTGATATGGGCTACAAGACATTGTCTAGATACTGTCAAG ATTTCGTTGCTGATGGTTCTAGCTCCCCTGTCTCTCCAAATTCTAGCCGGAAAGGATGGGTTGCACCTCATTCAGCTGAAGCTGATATTGCTGGAACGGT TGTTGTGAGAGATTTTGTTACAAGAGCTGTGATTTCGCAATTTAGAGCTCATACAAGTCCCATTTCTGCTCTATGTTTTGATCCGAGTGGTACACTATTG GTTACTGCATCAATTCATGGACACAGCATAAACATTTTCCGGATCATGCCTTCTGCTGTTGCTGGTGGCTCAGGTGCAAAGAGTTTCAAATGGAGCTCTT CTCATGTGCACCTTTACAAGCTTCATAGGGGCATTACATCTGCGGTGATACAGGATATTTGCTTCAGCAGTTATAGTCAGTGGGTTGCCATAACTTCATC CAGGGGAACCTGCCATATTTTTGCACTTTCACCGTTTGGTGGTGAGAATGTTCTCCAATTACAGAACTCTGATGTGGATGGACCAGTGCTTTCACCGGTT TTATCGCTACCATGGTGGTCAACTCCATGGTTCCAAGCGAATGCACAATCCTTCTCTGAATCCCCACCACCACCACCTGTTACTCTTTCTGTGGTGGCTC GAAGAAAGAGTAATTCTGGCTGGCTAAACACAGTTAGCAGTGCTGCATCGTCTGTTTCAGGAAAGGCCTTGATACCGTCAGGTGCTGTTGCTGCCGTCTA TCACAACTGTGTACCACAAGATTCACGACCTTCGCATTTGAAGAAATCTAATGCCTTGGACCACCTGTTAGCTTATACTCCATCCGGCCATGTAGTCCAA TACAAATTGGTGTCTTCAGCTGGGACAGAACCTAGTGAAGGTCCTCAAAGAACTGGACTAGGTTCTTCACTGCAGACACCAGACGAGGAACTGCGAGTCA AAACCGAGTCTGTGCAGTGGTGGGATGTTTGCAGAAGAATAGATTGGCCAGAAAGAGAGGAGTATGTGTCTGGACTCGCTCATAGCAGGCATGGAAACAC AGAAGTGGCCATGGATACTTCTGATTCTGCAGATAATGAGAGCAGGAATGCTGCAGAGGCTTCTGATTACCGAAATAATGCTACGAGGAATATGGACTTG GTGAAATCACATGACCAGTCTCGCTTATATCTTGCTAATGCCGAAGTGAAGATAAGCCCCTGGAGAACACCTCTCTGGCAGAAATCTAAGGTCTACTTCC ATGCAATTGATGGCATTGGAGCTGATGACCAGAATGCCGCTGATGATTCCAGTGGTGAAACTGCAATTGAGGAGGTTCAATGCCATGAAATTGAAATCAG GAGGAAGGATCTACTGCCTGTTTTCGACAATTTCCACAGAATTGCCGATTGGAGCGACCGGGGAATTCGGAGGGAAAGATCCACAATTTCTACTGGATCT GGATCTACTGTTCCTACGGTTTTACAGCATAAGATAATTTCATCAAGCTCTAATGCAAACTCAGAAACTGGCTCGTTAGCTAACTTGTACATATCAGCTC AACATCCTCGTGAAAATTTCGGAGGAGGACGAGTGATTTCTGGTTTGGCATCCCCAACTGATAAGCCTTCTCCAATGAGCGTTTCTCCTGCTGAAGACAG CAACTCTGTACATAGTGAAATAGCGTCTTTAGCGAACAGCTCACCTGCTCATATGGGAAATGAAGGTCGGTCTTCGTCATCAGCCAGTGCTCTAACCAGC GCATCGTCGAGCTCCAACCGTTCCGATCTAAGTGCGAACCTGATCGACGAAGGGATGGCGAGTGAGTCCCTGGATTTTGAGCAGGTTTTCCGGGAGGGAT ACTGTAAATCTGAACGTCCCCCCGAATCAGCAGCCGATCTCGAGAACAACCCCGATGAAGAGGATGATGACATGCATGGAGGTGTTTTTCTTTTCTCAGA GGAAGCATTGTCCAGTCATCATCTTGGTATTGATCTTACTTTCTCTTCTTTCCTCATCTCTATCCATAGAGTCGAATCGAAAAGGAAGTCAAGAAAATCG GTTAGAGCCAAACGCGAGGGAGTGAAGAACTTTGGCGTGGAAGGTACCGTGAACGAAGGTTTCGACGATCGGAGTAGCAAGCTCGAGGGAGGGCTCGCGA CGAAGGGAATGTGA
AA sequence Show only first row Show all	>Lus10000925 pacid=23170811 polypeptide=Lus10000925 locus=Lus10000925.g ID=Lus10000925.BGIv1.0 annot-version=v1.0 MKNNNKGNNSSNGFFPSSLKFLSSCIQTASSFPPVSRPLLPASGQLPLRSPAIIKAGLRTSCGLSGWCEQVLWASFDKLQISPSSYRNVLLLGYSNGFQV IDVEDASGVTELVSRRDDPVTCLRMQPPPAKADGCEGFRAAHPLVLVACQESDTPPVVISGKDGLARDSSNEHQAGNFATVVRFYSLKSHNYVHVLKFMS PVFMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGGIMANPGYGPMAVGPRWIAYASDNQLVSNTGRLSPQCLTPSMGVSPSTSPGNAN LVARYAMESSKHLASGLMSLGDMGYKTLSRYCQDFVADGSSSPVSPNSSRKGWVAPHSAEADIAGTVVVRDFVTRAVISQFRAHTSPISALCFDPSGTLL VTASIHGHSINIFRIMPSAVAGGSGAKSFKWSSSHVHLYKLHRGITSAVIQDICFSSYSQWVAITSSRGTCHIFALSPFGGENVLQLQNSDVDGPVLSPV LSLPWWSTPWFQANAQSFSESPPPPPVTLSVVARRKSNSGWLNTVSSAASSVSGKALIPSGAVAAVYHNCVPQDSRPSHLKKSNALDHLLAYTPSGHVVQ YKLVSSAGTEPSEGPQRTGLGSSLQTPDEELRVKTESVQWWDVCRRIDWPEREEYVSGLAHSRHGNTEVAMDTSDSADNESRNAAEASDYRNNATRNMDL VKSHDQSRLYLANAEVKISPWRTPLWQKSKVYFHAIDGIGADDQNAADDSSGETAIEEVQCHEIEIRRKDLLPVFDNFHRIADWSDRGIRRERSTISTGS GSTVPTVLQHKIISSSSNANSETGSLANLYISAQHPRENFGGGRVISGLASPTDKPSPMSVSPAEDSNSVHSEIASLANSSPAHMGNEGRSSSSASALTS ASSSSNRSDLSANLIDEGMASESLDFEQVFREGYCKSERPPESAADLENNPDEEDDDMHGGVFLFSEEALSSHHLGIDLTFSSFLISIHRVESKRKSRKS VRAKREGVKNFGVEGTVNEGFDDRSSKLEGGLATKGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	0	1
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	2.0	0.8953
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	2.0	0.8953
AT4G30790			unknown protein		Lus10007701 [exp]	3.2	0.8753
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	4.6	0.8650
AT1G58170			Disease resistance-responsive ...		Lus10018340 [exp]	4.9	0.8626
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	6.3	0.8809
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	6.5	0.8476
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	7.7	0.8327
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	8.5	0.8448
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	9.6	0.8415

Compare expression of checked genes

Lus10000925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.