Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21510 155 / 4e-49 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT1G03430 138 / 2e-42 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G29350 134 / 7e-41 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT5G39340 131 / 9e-40 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT3G16360 104 / 4e-29 AHP4 HPT phosphotransmitter 4 (.1.2) AT1G80100 64 / 1e-13 AHP6 histidine phosphotransfer protein 6 (.1.2) AT4G04402 64 / 3e-13 two-component phosphorelay mediator, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002256 [exp] 199 / 6e-67 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 162 / 5e-52 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10012777 [exp] 162 / 1e-51 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10035596 [exp] 113 / 2e-32 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10003256 [exp] 112 / 3e-32 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10042680 [exp] 108 / 2e-30 AT1G03430 142 / 2e-43 histidine-containing phosphotransfer factor 5 (.1) Lus10027965 [exp] 101 / 2e-28 AT1G03430 119 / 2e-35 histidine-containing phosphotransfer factor 5 (.1) Lus10025821 [exp] 97 / 3e-26 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10038280 [exp] 95 / 2e-25 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040400 [exp] 195 / 5e-65 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 192 / 1e-63 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.016G113500 [exp] 163 / 2e-52 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.006G098200 [exp] 152 / 4e-48 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.010G027100 [exp] 152 / 4e-48 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 143 / 2e-44 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.014G136200 [exp] 126 / 5e-38 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.001G189900 [exp] 112 / 4e-32 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.018G046800 [exp] 104 / 2e-29 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.006G236300 [exp] 100 / 1e-27 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10000926 pacid=23170814 polypeptide=Lus10000926 locus=Lus10000926.g ID=Lus10000926.BGIv1.0 annot-version=v1.0 ATGGATGGTGTGGTTCAGTTGCAGAGGCAGTTGGTTGACTACACAGCTTCACTATTCCAAGAGGGAATCTTGGATGACCAATTCACTCAACTCCAAAGCC TCCAAGATGAGAGCAACCCTGAGTTTGTTGTGGAAGTTGTCTCCCTCTTCTTTGAAGACTCTGAGAGGCTCATCAATGAGCTTGCCAATTCCTTAGAGCA ACAAACAATTGATTTCAAGAAGATTGATGCCCATGTCCACCAATTGAAGGGCAGTAGTTCTAGAGAAAATCATCGTGGTAGCATTGGAGCTCAAAGGGTT CAAAAGGCTTGCATCGAGCTCCGAAATCATTGTGGAGAACAGAATCGTGAAAGATGTCGGAAATGTCTTCAACAAGTGAAAATCGAGTACGTGCTAGTGA AGAACAAGCTCGAAACTTTGTTCAAAATTGAAAGGCAAGTTTTGGCAGCTGGTGGTGATGCTTAG
AA sequence Show only first row Show all	>Lus10000926 pacid=23170814 polypeptide=Lus10000926 locus=Lus10000926.g ID=Lus10000926.BGIv1.0 annot-version=v1.0 MDGVVQLQRQLVDYTASLFQEGILDDQFTQLQSLQDESNPEFVVEVVSLFFEDSERLINELANSLEQQTIDFKKIDAHVHQLKGSSSRENHRGSIGAQRV QKACIELRNHCGEQNRERCRKCLQQVKIEYVLVKNKLETLFKIERQVLAAGGDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10000926 [exp]	0	1
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	7.3	0.9181
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	11.2	0.9131
AT3G19540			Protein of unknown function (D...		Lus10028070 [exp]	11.2	0.9119
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	15.4	0.9101
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	17.7	0.9061
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	19.0	0.9053
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	21.0	0.8928
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	23.7	0.8990
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	25.7	0.9050
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	27.4	0.8942

Compare expression of checked genes

Lus10000926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.