Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05130 102 / 1e-22 unknown protein AT5G27330 78 / 6e-15 Prefoldin chaperone subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002255 [exp] 832 / 0 AT3G05130 156 / 2e-40 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028600 [exp] 149 / 3e-38 AT5G27330 289 / 6e-89 Prefoldin chaperone subunit family protein (.1) Potri.005G040500 [exp] 124 / 1e-29 AT5G27330 247 / 2e-73 Prefoldin chaperone subunit family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000927 pacid=23170815 polypeptide=Lus10000927 locus=Lus10000927.g ID=Lus10000927.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAGAAGAGCCACTCCAACCACCACTCCAAGACTGAGAACGACGAGACTCTGAATCTGGACCAGAACCAGAACCACCCGCCGCCGCAGTCGG AGCACCCAGCGGTTCTAGCGATGGCGGAGCAACCACAGCAACCACATCGACCTCCGCCGCCGCAGCCGCCGGCGAGAACTTCCTCCTTGGACGTTGAGTT CCAGAAGCTGCAGTCGCTGAACAAGATACTGGTACAGGACGTCGCGGATAAGAGGCGGAAGATGGAGGCTCTCGAGACGGAGAAGGAGCAATTGGCGGCG GAGGTGAAGAAGCTTGGAAGTGCAGCCGAGGGGAGCATCCGTTCGGAGATCGAGCGTGAGGTGGCCTTCACTGTTCTTGGAGAAATGGAGGAGATCGAGC GATTGACTGCTGAGGTGGAGGACGGGAAGGTTAAGCTGAGCAAGGTTTGTACGGAGAAGGATGCGATTAAGAGCCAGCTCGATGAGCAGATTCTGGAAGG GGAACGGTTGAAGGTGATAGTGAAGGTGATGGAGAAGAAAGGGAAGGAGAACGAGGACGAGATTCTTGGACTGACGAAGGAGATTGACTATCTGGTCAAG GAGAAGAAGGATTCGGAGATAGAAATTGATCGGATTGAAAGGATTAGGGTGTCCAACGAGAGGAGTCTGGCTGAGAAGGCTGAGGAGATTGGAGCGTTGA AGGTTGAGATTGAGCGGATTGAGAAAGAGAGGAGTGATCAGGTTTTCAAGATAGAGTTCTTGGAGAAAGATTTTGAAGGACTGAACACTGATTTGCTGAG CTTGAGGAGCGAAAATGGAGGTTTGAGTGAGAAGGTAGTGTATCTGGAGAAGGTGTGCGGTGAAGCAATTGAGAAGGAGAAAGCTTTTGGGATGAAGTTT GATACATTGACGGAAGAAATGATTCGGAATAGCAAGAGGATTGAAGAGTTAACGGAGGAGAAGAGCTCTTTGGTGAAGACTATCGAGTCTGTGAATACTG AAGTGGAGCTGAAGAACGAGCTGATTCAGAAGCTGTCGAGCGAGAAATCTGACATCGAGAGGATCTCCAAGAGGAAGGAGAGTGAGATCATGGAGTTGCA GAGCAATGTCAGCGAGTTGAACGAATCAGTTCTTCGACTGAAAGACTCTCTCAAGGTTCAAGAAGAAAAGAACAGTGAGTTAGGCATTGAATCCAGTAAG TTCAGAGATGAGCTTCAGCAAATGAGAATCGAGAAAGAAGAGCTAAAGAAGCTTCTTGTTCAGGAAACTAATGAAGGGTCGAAGCTGAAAGCTTTAGTTC AACAGATGGAGAAAATGATTGAAGAAGGAGTACAGAAGCTGGAGAAGGCTAAGATCGAACAAAAGAATCTAATGGAGGTTAAGAAATCACTGGAGTTCGA ACTCAACCAGTTGAAGGAGGAGAGCTCTGCAACTCAGAAGAGGCTCTCCGATCAAAACGGCCATCTGACGAGCAAGCTACGGATGGTGGCATCACTGCTC CCTCAGGATGATGATAGCAGCAGCAATGGCAATGGCAAGGAACTCGAAGAGCTGGTGGAAAACGTGAGGGGATCGTTCAGAGAGAAGGAAGCATTGCTGG TGAAGAAGAATCTGCAGGTGACCTCACTCGAGGAATCCGTTGCAGAAGCGGAGAAGAAAAAGGGCATCTGGGCGATGGTTTCTTCAATCACAACCTTGTT CGCCGCTGCTTCACTTGCCTTTGCTTTCAAGGTGCGTTAA
AA sequence Show only first row Show all	>Lus10000927 pacid=23170815 polypeptide=Lus10000927 locus=Lus10000927.g ID=Lus10000927.BGIv1.0 annot-version=v1.0 MAKKKSHSNHHSKTENDETLNLDQNQNHPPPQSEHPAVLAMAEQPQQPHRPPPPQPPARTSSLDVEFQKLQSLNKILVQDVADKRRKMEALETEKEQLAA EVKKLGSAAEGSIRSEIEREVAFTVLGEMEEIERLTAEVEDGKVKLSKVCTEKDAIKSQLDEQILEGERLKVIVKVMEKKGKENEDEILGLTKEIDYLVK EKKDSEIEIDRIERIRVSNERSLAEKAEEIGALKVEIERIEKERSDQVFKIEFLEKDFEGLNTDLLSLRSENGGLSEKVVYLEKVCGEAIEKEKAFGMKF DTLTEEMIRNSKRIEELTEEKSSLVKTIESVNTEVELKNELIQKLSSEKSDIERISKRKESEIMELQSNVSELNESVLRLKDSLKVQEEKNSELGIESSK FRDELQQMRIEKEELKKLLVQETNEGSKLKALVQQMEKMIEEGVQKLEKAKIEQKNLMEVKKSLEFELNQLKEESSATQKRLSDQNGHLTSKLRMVASLL PQDDDSSSNGNGKELEELVENVRGSFREKEALLVKKNLQVTSLEESVAEAEKKKGIWAMVSSITTLFAAASLAFAFKVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05130			unknown protein		Lus10000927 [exp]	0	1
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	4.0	0.9527
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10024286 [exp]	6.3	0.9416
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	8.2	0.9467
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	11.1	0.9460
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10034549 [exp]	11.8	0.9382
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	12.4	0.9384
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	15.2	0.9449
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	16.4	0.9352
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	17.0	0.9356
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	18.0	0.9307

Compare expression of checked genes

Lus10000927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.