Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27320 553 / 0 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 549 / 0 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 501 / 2e-179 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 218 / 1e-68 ATCXE18 carboxyesterase 18 (.1) AT5G62180 155 / 1e-44 ATCXE20 carboxyesterase 20 (.1) AT5G16080 149 / 4e-42 ATCXE17 carboxyesterase 17 (.1) AT1G68620 149 / 5e-42 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 145 / 1e-40 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45610 136 / 3e-37 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 135 / 8e-37 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002254 [exp] 713 / 0 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 520 / 0 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10018963 [exp] 429 / 2e-152 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 234 / 2e-74 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 230 / 7e-73 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10008189 [exp] 188 / 1e-59 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10017587 [exp] 168 / 5e-49 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10036168 [exp] 167 / 7e-49 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033548 [exp] 163 / 3e-47 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028700 [exp] 584 / 0 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 575 / 0 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 536 / 0 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 533 / 0 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 275 / 7e-91 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 255 / 5e-83 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 239 / 2e-76 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.017G113700 [exp] 169 / 1e-49 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.001G032400 [exp] 167 / 5e-49 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 166 / 3e-48 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10000928 pacid=23170806 polypeptide=Lus10000928 locus=Lus10000928.g ID=Lus10000928.BGIv1.0 annot-version=v1.0 ATGGCTAAGAGTAATGAAGTCACCACCGTCAATGAAAGCAAGATGGTGGTCCCTTTGAATACATGGGTACTGATATCAAACTTCAAGCTAGCTTACAATC TGCTCCGTAGGCCGGACGGAACGTTCAACAGGCATTTGGCGGAGTTCCTCGACAGAAAAGTTGCTGCAAATGCGAACCCGGTTGATGGGGTGTTCTCTTT CGATGTCATTGTCGACCGTGGCACGAATCTGCTTTGCAGGATCTACAGGCCTTCCCATGGGGAAGAGCAGTTGAATGTGGCCGAACTCGAGAAGCCGGTG AAGTCTGATGACAATGATGATGTTGTGCCAGTCATCGTGTTCTTCCATGGAGGAAGCTTTGCACATTCGTCAGCGAACAGTGCCATCTACGACACCTTAT GTCGAAGGCTGGTGGGTCTTTGCAACGCAGTGGTGGTCTCGGTGAACTACAGGCGTGCACCCGAGCATCGGTATCCATGTGCTTATGATGATGGCTGGAC GGCTCTCAACTGGGTTAAATCCAGAACATGGCTGGAGAGTAGTAAAAGTTCCAAAGTTCACATCTTCTTAGCTGGTGATAGTTCGGGTGGCAACATAGCT CACCACGTTGCTTTACGAGCTGCTGAATCGGATATCGAGATACAGGGCAACATGTTGCTCAACCCGATGTTTGGAGGGGAAATTAGGACCGAATCGGAGA TGAGGCTTGACGGGAAGTACTTTGTTTCCGTCCAGGATAGGGACTGGTATTGGAGAGCGTTTCTCCCCGACGGAGCTGATAGGGACCATCCGGCTTGCAA TCCGTTCGGTCCCAAAGCTACGAGCCTTGAAGGAACGAAGCTATTCCCCAAGAGCTTCGTTGTTATAGCTGGCTTGGATTTGGTCCAGGACTGGCAGCTG GCTTACGTGGAAGGGCTTAAGAAGGCTGGAAAGGATGTGAAGTTTCTGTATCTCGAGAAGGCGACGATAGGGTTCTACTTGTTGCCGAATAACGCTCATT TCCATACTGTGATGGACGAGATTCAGCAATTCGTGAGATCTAACTGTTGA
AA sequence Show only first row Show all	>Lus10000928 pacid=23170806 polypeptide=Lus10000928 locus=Lus10000928.g ID=Lus10000928.BGIv1.0 annot-version=v1.0 MAKSNEVTTVNESKMVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVAANANPVDGVFSFDVIVDRGTNLLCRIYRPSHGEEQLNVAELEKPV KSDDNDDVVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCNAVVVSVNYRRAPEHRYPCAYDDGWTALNWVKSRTWLESSKSSKVHIFLAGDSSGGNIA HHVALRAAESDIEIQGNMLLNPMFGGEIRTESEMRLDGKYFVSVQDRDWYWRAFLPDGADRDHPACNPFGPKATSLEGTKLFPKSFVVIAGLDLVQDWQL AYVEGLKKAGKDVKFLYLEKATIGFYLLPNNAHFHTVMDEIQQFVRSNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	0	1
AT2G46080			unknown protein		Lus10036385 [exp]	3.0	0.8939
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	7.5	0.8578
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	8.1	0.8844
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019880 [exp]	8.4	0.8645
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	8.4	0.8622
AT5G64816			unknown protein		Lus10009081 [exp]	8.8	0.8701
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	11.1	0.8815
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10002254 [exp]	14.6	0.8845
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	15.1	0.8403
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	15.2	0.8807

Compare expression of checked genes

Lus10000928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.