Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54690 103 / 1e-28 HTA3 ,G-H2AX ,GAMMA-H2AX ,H2AXB histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) AT5G54640 101 / 2e-28 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1) AT1G08880 102 / 3e-28 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) AT4G27230 101 / 3e-28 HTA2 histone H2A 2 (.1.2) AT1G51060 99 / 4e-27 HTA10 histone H2A 10 (.1) AT3G20670 97 / 2e-26 HTA13 histone H2A 13 (.1) AT5G02560 87 / 3e-22 HTA12 histone H2A 12 (.1.2) AT5G59870 86 / 4e-22 HTA6 histone H2A 6 (.1) AT5G27670 83 / 7e-21 HTA7 histone H2A 7 (.1) AT1G52740 60 / 4e-12 HTA9 histone H2A protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027154 [exp] 105 / 2e-29 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10032464 [exp] 101 / 5e-28 AT1G51060 240 / 2e-83 histone H2A 10 (.1) Lus10042960 [exp] 101 / 5e-28 AT1G51060 243 / 2e-84 histone H2A 10 (.1) Lus10003750 [exp] 95 / 1e-25 AT1G54690 239 / 7e-83 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10028044 [exp] 95 / 2e-25 AT1G08880 238 / 4e-82 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Lus10004945 [exp] 90 / 2e-23 AT5G02560 233 / 5e-80 histone H2A 12 (.1.2) Lus10040853 [exp] 90 / 2e-23 AT5G02560 228 / 4e-78 histone H2A 12 (.1.2) Lus10005892 [exp] 90 / 2e-23 AT5G02560 230 / 1e-78 histone H2A 12 (.1.2) Lus10005444 [exp] 89 / 6e-23 AT5G02560 234 / 2e-80 histone H2A 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028900 [exp] 103 / 1e-28 AT1G54690 220 / 4e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040800 [exp] 102 / 2e-28 AT1G54690 221 / 2e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.011G131400 [exp] 101 / 3e-28 AT1G51060 200 / 1e-67 histone H2A 10 (.1) Potri.001G415700 [exp] 101 / 8e-28 AT1G51060 174 / 1e-56 histone H2A 10 (.1) Potri.004G031300 [exp] 100 / 9e-28 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.013G028800 [exp] 99 / 4e-27 AT1G08880 190 / 2e-63 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.005G040700 [exp] 99 / 5e-27 AT1G08880 183 / 2e-60 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.013G018200 [exp] 91 / 4e-24 AT5G27670 160 / 4e-51 histone H2A 7 (.1) Potri.006G082300 [exp] 90 / 2e-23 AT5G02560 143 / 2e-44 histone H2A 12 (.1.2) Potri.005G026500 [exp] 85 / 1e-21 AT5G27670 145 / 2e-45 histone H2A 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10000929 pacid=23170812 polypeptide=Lus10000929 locus=Lus10000929.g ID=Lus10000929.BGIv1.0 annot-version=v1.0 ATGAGTTCAGCCGCCGCCGGATCAACCAAGGGAGGCCGAGGCAAGGGCAAGACCACTAAATCCGTCTCCAGATCCTCCAAGGCCGGATTGCAGTTCCCCG TCGGAAGAATCGCCAGGTTCCTCAAGGCCGGCAAGTACGCCGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGC CGAGGTTCTGGAGCTGGCCGGAAACGCTGCGAGAGACAACAAGAAGAACAGGATCGTCCCTCGCCACATCCAATTGGCGGGGGGGGAAGAAAAGGGGCTG GGGCGAGGGCGGGGGGTTGTGAGGAACGCGCCAGGGGGGGGGTCCGCCAGGTGTTCTCCCCAACATCCACAACACTCTTCTGCCCAAGAAGGCTGGAGCG AAAGGCGACATCGGATCTGCTTCACAAGAGTTTTAAGTTTGGTTAATTTGGTAACGATCTAG
AA sequence Show only first row Show all	>Lus10000929 pacid=23170812 polypeptide=Lus10000929 locus=Lus10000929.g ID=Lus10000929.BGIv1.0 annot-version=v1.0 MSSAAAGSTKGGRGKGKTTKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAGGEEKGL GRGRGVVRNAPGGGSARCSPQHPQHSSAQEGWSERRHRICFTRVLSLVNLVTI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	0	1
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10015355 [exp]	2.2	0.8661
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	2.4	0.8917
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	4.5	0.8832
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	4.9	0.8685
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	7.5	0.8609
AT5G57880		MPS1, ATPRD2	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10010784 [exp]	8.5	0.8355
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	10.6	0.8575
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10021405 [exp]	14.0	0.8494
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002845 [exp]	16.1	0.8639
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	16.9	0.8781

Compare expression of checked genes

Lus10000929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.