Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17070 872 / 0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G42330 735 / 0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT5G26610 52 / 6e-07 D111/G-patch domain-containing protein (.1.2.3) AT3G09850 54 / 7e-07 D111/G-patch domain-containing protein (.1) AT2G24830 46 / 0.0001 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002252 [exp] 1066 / 0 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10006830 [exp] 587 / 0 AT1G17070 469 / 3e-157 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002251 [exp] 308 / 3e-100 AT1G17070 132 / 2e-36 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10036327 [exp] 67 / 5e-11 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10019584 [exp] 65 / 2e-10 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10006831 [exp] 53 / 1e-08 AT1G17070 56 / 2e-10 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10031446 [exp] 54 / 2e-07 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 54 / 3e-07 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10026901 [exp] 48 / 4e-05 AT2G24830 471 / 1e-162 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076000 [exp] 1086 / 0 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.019G043200 [exp] 994 / 0 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.018G113600 [exp] 62 / 2e-09 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.006G189501 [exp] 56 / 1e-07 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.005G002700 [exp] 53 / 4e-07 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G002100 [exp] 52 / 8e-07 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.018G016200 [exp] 44 / 0.0004 AT2G24830 421 / 1e-143 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain CL0449 [flax] [poplar] PF07842 [flax] [poplar] GCFC GC-rich sequence DNA-binding factor-like protein CL0449 [flax] [poplar] PF12457 [flax] [poplar] TIP_N Tuftelin interacting protein N terminal
Representative CDS sequence Show only first row Show all	>Lus10000930 pacid=23170813 polypeptide=Lus10000930 locus=Lus10000930.g ID=Lus10000930.BGIv1.0 annot-version=v1.0 ATGGACGAGGACCAGGAGATGGAGAACTACGGGACGGACAACGACTTCGAAGGGGGCGAGTGGAGAGGCGGCGAGTTCTACTGCAAGAAGCGGAGGGAGA GGAAGTCCGTCCAGACGAAAGAAGACGTTCTCTACGGCGTGTTCCAGGCGAACTCATCCGACTCCGACGAGCAAGGCGGGAGGAGGAAGCGGAGGAAAGA CAAAGACCGCGATCGCGATCTCACCAAGCCTGTCAACTTCGTCTCCACAGGTACTGTTATGCCTAACAAAGAACTCGATAAGAACTCTAGAGAGGTTGAT AACGATGTTGTTAAGGACGAGGATATGTTTGCTCCGGAGGATGATGATCACAGTAGCGGTAGGGCATGTTTGGGCGCTGGTTCTGGATTAGGTTTTAATT CCGGCGGTGAAGGATTGGGACGCAAGGATGGTAATGATAGTGATGAAGATGCTGTGCTTAAGTCTTTGCCGCTGGAATTTGGTAGGAGTATCAAGGAAAG GCGGGAGAGGGAGAAAGAGAGGTTGAAGAAGAAGAAGGATGAGAAAGGAGGGAAGAGGAAGGATGATGTTGGCTTCGAGAAGCATACAAAAGGGATAGGG TCAAAGTTGCTTGAGAAGATGGGGTACAAAGGAGGTGGCTTGGGGAAGAACGAGCAAGGTATTGTTGCTCCAATCGAAGCAAAGTTGAGGCCGAAGCAAA CTGGTTTAGGATTCAACGATTATAAAGAGGTGGCGGATGTGAAGGTTCCTCAGGTGGAGGAGAAGAAGGCTGTAAATCAGAGCCAAAGTCAGTCGGTTGG AAGGTCTAAAGAGAAGATGTGGCTTCAGGGGAAGAAAAAGAAAGAAGAGAGGTATGTTACAGCTAAGGAGCTCCTGGATCAGAAGGAAGAACAGGGGTTT GAGATTACTCAGAAGGTGATTGATATGAGGGGTCCTCAGGTTAGAGTGTTGACGAATCTAGAGAATCTGAATGCAGAAGAACAGGCAAGGGACAGTGATA TTCCGATGCCGGAGCTTCAGTACAACGTTAGGTTGATTGTAGACATGGTAGAGGCTGATATCCAGAAAATCGACAGTGATTTGAGGAGAGAAAGGGATAC AGCGATTGCCTTGCAGACGGAGAAGGAGAAGTTGGAGAAAGATGCTTCACGCCAAAAGGAGCAACTAGATAGCATGAAGGAGATTATGACCGTCTTAAGC CACATTGAAGAGCAAAAATCATTGGGAACTTTAACCCTGGACAGTCTTGGTGAATGCTTTAATGAGCTTCGGATGAAATTTGCAGATGAGTATAAGATGG CCAACTTGCCCTGCATTGCATGCTCGTTTGCTCTGCCTTTGTTTATCAGAGTGTTTCAGGGATGGGATCCTTTTAGAAATCCAATGCATGGATATAAACT GATCGAGTCCTGGAAAATTTTACTTCAAGGTGGCGATGAATCCCACGATATATGGGATATCGGGACGCCCTATACACAGTTAGTCTCGGAATTATTCTTA CCCGCAGTTAGAATAGCCGGTATTAACACTTGGGAGCCTCGAGACCCCGAGACAATGCTTAGATTTCTAGAGACATGGGAGAAGCTCTTGCCATCTTCAG TTTATCACAGCATATTGGATCACATAGTCCTACCAAAGCTGTCAACTGCTGTGGACTCATGGGATCCTCGGCAAGAGACTGTAGCAATCCATGTCTGGGT GCATCCATGGCTACCTTTATTAGGGCCGAAGTTGGAAGGATTATACCAGAGAATCCGGATGAAGCTGAGTATGGTTCTCGACGCCTGGCACCCATCTGAT GCATCAGCCTATGCTATCTTATCACCGTGGAAAACCGTTTTCGATACAGTCAGCTGGGAGAATCTAATGCGAAGATACATAGTTCCTAAACTGCAGGTTG CACTCGAAGCCTTCCAGATAAATCCCGCAAGTCAGAACCTCAATCAGTTCAACTGGGTTTTATCATGGGCTTCTGCTCTTCCGATTCACATTATGGTTGA CCTATTCGAAAGGTTTTTCTTCGTGAAATGGCTACAAGTTCTGTATCATTGGCTCTGTACAAATCCAAATCTGCAGGAAGTTCATAAATGGTATATGGGT TGGAAGGGCCTTCTCCCACCGGAGCTTCAGGCACATGAAAATATCCGGTATCAGTTTACAATAGGCTTAAAGATGATTGATCAGGCTATCGAAGGTCAAA CGGTTGCCCAACCCGGTTTAAGGGAGAACCTTAGCTACATTCGGGCACAAGAGTACAGAGCAGCTCAGCCTCCGCAACAAGCTCCGGGCCGGATGGATAA TGTTGCAGTCGAGATGACTTTGAAAGACGTGGTGGAGGCCCATGCTCAGCATCACGGTCTCCTGTTTAAGCCGAAGCCAAACAGGACTCACAATGGCCAT CAGATATATGGCTATGGTAATGTAAGCGTGTATGTGGACTCTCTGAATCAGAGACTTTATGCTCAGAATGAGCAGAGTTGGGTGCTTGCCAACCTTGACA TGTTGCTCGAGATGCATAACAATTCTCTTCGGAGGAAACGATGA
AA sequence Show only first row Show all	>Lus10000930 pacid=23170813 polypeptide=Lus10000930 locus=Lus10000930.g ID=Lus10000930.BGIv1.0 annot-version=v1.0 MDEDQEMENYGTDNDFEGGEWRGGEFYCKKRRERKSVQTKEDVLYGVFQANSSDSDEQGGRRKRRKDKDRDRDLTKPVNFVSTGTVMPNKELDKNSREVD NDVVKDEDMFAPEDDDHSSGRACLGAGSGLGFNSGGEGLGRKDGNDSDEDAVLKSLPLEFGRSIKERREREKERLKKKKDEKGGKRKDDVGFEKHTKGIG SKLLEKMGYKGGGLGKNEQGIVAPIEAKLRPKQTGLGFNDYKEVADVKVPQVEEKKAVNQSQSQSVGRSKEKMWLQGKKKKEERYVTAKELLDQKEEQGF EITQKVIDMRGPQVRVLTNLENLNAEEQARDSDIPMPELQYNVRLIVDMVEADIQKIDSDLRRERDTAIALQTEKEKLEKDASRQKEQLDSMKEIMTVLS HIEEQKSLGTLTLDSLGECFNELRMKFADEYKMANLPCIACSFALPLFIRVFQGWDPFRNPMHGYKLIESWKILLQGGDESHDIWDIGTPYTQLVSELFL PAVRIAGINTWEPRDPETMLRFLETWEKLLPSSVYHSILDHIVLPKLSTAVDSWDPRQETVAIHVWVHPWLPLLGPKLEGLYQRIRMKLSMVLDAWHPSD ASAYAILSPWKTVFDTVSWENLMRRYIVPKLQVALEAFQINPASQNLNQFNWVLSWASALPIHIMVDLFERFFFVKWLQVLYHWLCTNPNLQEVHKWYMG WKGLLPPELQAHENIRYQFTIGLKMIDQAIEGQTVAQPGLRENLSYIRAQEYRAAQPPQQAPGRMDNVAVEMTLKDVVEAHAQHHGLLFKPKPNRTHNGH QIYGYGNVSVYVDSLNQRLYAQNEQSWVLANLDMLLEMHNNSLRRKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	0	1
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	4.9	0.8984
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	6.5	0.9113
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10002794 [exp]	6.6	0.8869
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	8.8	0.9008
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	9.5	0.8557
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	11.0	0.9035
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005159 [exp]	12.5	0.8412
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012017 [exp]	16.1	0.8925
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	19.3	0.8371
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	20.0	0.8972

Compare expression of checked genes

Lus10000930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.