Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10250 191 / 5e-62 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G53540 120 / 1e-34 HSP20-like chaperones superfamily protein (.1) AT1G07400 116 / 4e-33 HSP20-like chaperones superfamily protein (.1) AT1G59860 112 / 1e-31 HSP20-like chaperones superfamily protein (.1) AT5G59720 106 / 4e-29 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT3G46230 105 / 6e-29 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 101 / 2e-27 HSP20-like chaperones superfamily protein (.1) AT5G12020 87 / 1e-21 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 83 / 4e-20 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G37670 79 / 1e-18 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040560 [exp] 307 / 1e-107 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 152 / 1e-46 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 147 / 9e-45 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 107 / 1e-29 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 104 / 4e-28 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 103 / 5e-28 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 103 / 5e-28 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 102 / 2e-27 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 102 / 2e-27 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089200 [exp] 182 / 6e-58 AT4G10250 225 / 1e-74 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 120 / 8e-35 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 120 / 8e-35 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 119 / 3e-34 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 119 / 4e-34 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 118 / 8e-34 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 117 / 3e-33 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 115 / 8e-33 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 112 / 3e-31 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 112 / 3e-31 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10000932 pacid=23139513 polypeptide=Lus10000932 locus=Lus10000932.g ID=Lus10000932.BGIv1.0 annot-version=v1.0 ATGGCACCACCATCATCATCATTATTTCAAGTTCAACGTCTTCTCTTCTTACAAATCATCTCGCCCTTACTCGCCTTGATCATCCTCAACACTACTAGTT CAACAGCATCTCTTCTCCCTCTCCTCGAACCCACACCTCTGCATCTCTGGAGGGACCCATTCCGGGTGTTGGAGCAGATACCATTGGGCCTCGAGCGGGA CCACCTAGCCGACGTGGCAGCACCCCTTCTTACCAGGGTGGACTGGAAGGAGACCCCTGAAGGACACGTCATCACTCTCGACGTGCCCGGTCTGAGTAAA GATGACATCAAGATAGAGGTGGAGGAGAACAGGGTTCTGAGAGTGAGTGGCGAGAGGAAGCGGCAGGAAGAGAAAAAGAGCGGGACGGAGGAGCACTGGC ACAGGCTGGAACGTTCCTACGGGATGTTCTGGAGGCAGTTTAGGATGCCTGAGAATGCTGATTTGGATTCTGTCAAGGCTAAGTTGGACAACGGGGTTTT AACACTGAGTTTCACCAAGTTGTCGCCTGATAAGGTTAAGGGTCCGAGGAGTGTGAGTATTGATGCAGGTGCCGGGAACTTGGATGAGGTGAAAGACGAG TCCAAGCACGAGTTGTGA
AA sequence Show only first row Show all	>Lus10000932 pacid=23139513 polypeptide=Lus10000932 locus=Lus10000932.g ID=Lus10000932.BGIv1.0 annot-version=v1.0 MAPPSSSLFQVQRLLFLQIISPLLALIILNTTSSTASLLPLLEPTPLHLWRDPFRVLEQIPLGLERDHLADVAAPLLTRVDWKETPEGHVITLDVPGLSK DDIKIEVEENRVLRVSGERKRQEEKKSGTEEHWHRLERSYGMFWRQFRMPENADLDSVKAKLDNGVLTLSFTKLSPDKVKGPRSVSIDAGAGNLDEVKDE SKHEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	0	1
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	2.4	0.8968
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	2.8	0.8911
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10040560 [exp]	2.8	0.8469
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	10.1	0.8675
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019836 [exp]	10.5	0.7375
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006700 [exp]	10.9	0.8638
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10041615 [exp]	11.0	0.8330
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023160 [exp]	11.2	0.8654
AT5G10695			unknown protein		Lus10042440 [exp]	11.4	0.8174
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	11.7	0.8656

Compare expression of checked genes

Lus10000932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.