Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33360 673 / 0 ATP-dependent Clp protease (.1) AT5G53350 583 / 0 CLPX CLP protease regulatory subunit X (.1) AT5G49840 486 / 4e-164 ATP-dependent Clp protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040561 [exp] 1073 / 0 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1) Lus10036701 [exp] 557 / 0 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1) Lus10037222 [exp] 526 / 0 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1) Lus10010691 [exp] 503 / 3e-171 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089500 [exp] 801 / 0 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1) Potri.015G012900 [exp] 569 / 0 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1) Potri.012G015600 [exp] 544 / 0 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1) Potri.004G229400 [exp] 504 / 1e-171 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10000933 pacid=23139514 polypeptide=Lus10000933 locus=Lus10000933.g ID=Lus10000933.BGIv1.0 annot-version=v1.0 ATGACTGGAATTTGGAGATGGCAGAAGCTCAAGGACACTGGCACCTCCCTCTTCCTCCGCTCATCGATCGCATTTCGCCTTCCTCCTCCTCCTCCTCCTT CTCCCGCAGCACGCTTCCTCCGTGTCTCTCCAATCTCCACGCATTTCAACTTCATCGGCGGTGGCGGCGGTTATCGTCGCCGGGAGTCTCTCATCAGGAT TCAGGAGCGATATAAATGGGACCAGGGCGGAGGCGATAGCGGAACTGGAGGTGGTGGTAATTACATTGATAACAACAGTATCCACCAGATTAGGGCTGAA GCTAATTGTCCTCGTTGTTCTAAGCACATGGATATTCTCTTCTCCAATAATCAAGGCCGGAATCCTCACAATCATATTCATAATCAAGTTCCCAATCCAT CTCCTACTTCCGATCCCTCTTCTTCGAATCAGAATAGTAGCAGCACTAGCTCCAGCAGCGGTGCCGATGTTTTGCAGGCGGTCAATTTTTGTCCAAGTTG TAAAACTGCCTACTACTTCCGCCCTAACAACACTGCTCCACTTCAGGGCAGTTTTGTGGAGATTGGGAGAATCAGCAATAGTAGGTTGAGGAATAAGTAC AATTCAGCCAAACATTCTAACAACCGTGGTAACAGTAACGACGATCAGGATTCATCTTCCGGTGATTTCGTTATCAGCAGCACCATTAATAAGACGCTTA AGTCTTCATTCTGGCAAACTCTCAGGTCTTATGCTGCTGACCCCCCTGAAAATGGGCCACCTCCTCCTCCCCCCCCACCACCTGCGCCTAATGGCCTGGC TGTTCATACTCCTCCTGGTCCCCCATTTGCACCTGGTGTTAATGTCGTCAGGGCTGCCTCCCCAGATGGTAATGTGGCAGAAGGTGATAAGGGTGGCAGG TGGGGTGGGGCTAATCTAGGCAAGGATTTTCCAACTCCTAAAGAGATCTGCAAGGGTCTTGACAAGTTTGTTATTGGCCAAGACAGGGCCAAAAAGGTGC TTTCCGTTGCTGTGTACAATCACTATAAGCGGGTCTACCATTCCTCCCAGAAAGGGTTAGGAGCAGAATCTTCGGGTATGAAGCCAATAGATGATGACGA TAATGTAGAGTTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGCTCAGGTACGAATTATGGGCTGAGTTTGGTTCTTGCAGTATGCTATCTGCAA GAGGCTGGTTATGTCGGTGAAGATGTTGAATCTATCCTATATAAACTGTTAGCGGCAGCTGAGTTCAATGTGCAAGCAGCTCAACAAGGGATAGTGTACA TTGATGAAGTTGATAAGATAACTAAGAAGGCTGAGAGCATTAACATTAGCAGAGATGTGTCTGGCGAAGGTGTACAACAGGCATTATTGAAAATGCTGGA AGGAACAATAGTTACAGTTCCTGAAAAGGGAGCAAGGAAGCAACCCAGAGGTGATAACATACAGATAGATACAAAAAATATTCTCTTTATTTGTGGTGGA GCATTTATTGATCTGGAAAAGACTGTTTCAGAGAGACGGCAAGACTCATCGATTGGATTTGGAGCACCTGTCCGAGCTAACATGAGAACTGCTGGAGTAA CCAATTCTGCTGTGACTTCATCCTTGCTTGAAGCAGCGGAGAGTGGTGATCTCATTGCCTACGGTCTCATACCAGAATTCATTGGGCGCTTTCCTATATT AGTTAGTTTGATAGCTCTAACAGAAGATCAACTTGTGCGGGTGCTCACAGAACCAAGAAATGCTCTTGGTAAGCAGTATAAGAAGTTATTTGGTATGAAC AAGGTGAAGCTGCATTTCACAGAAAAAGCACTTGGACTAATTGCCAGAAAAGCAATGGTTAAGAACACTGGTGCTAGGGGTTTGAGAGCCATACTAGAAA GTATTCTTATGGAATCCATGTATGAGATTCCGGATGATGAGCAAGGAAGTAACCGGGTAGTGGCAGTTGTAGTGGATGAAGAGTCTGTGGGATCAGAAAA CAAATGTGGTTGTGGAGGGAAGATTCTTCGTGGAGATGGTGCATTGGAACGGTGGCTTGTACAGTACAAGTTAAAAGATTCACCGGAAAATGGGGAAGCT GTGGAAGCAGAGTTGCAGGAGTCGGAGTCGGAAGTGTCAACAACGAGAGCCATGAGCATGTGA
AA sequence Show only first row Show all	>Lus10000933 pacid=23139514 polypeptide=Lus10000933 locus=Lus10000933.g ID=Lus10000933.BGIv1.0 annot-version=v1.0 MTGIWRWQKLKDTGTSLFLRSSIAFRLPPPPPPSPAARFLRVSPISTHFNFIGGGGGYRRRESLIRIQERYKWDQGGGDSGTGGGGNYIDNNSIHQIRAE ANCPRCSKHMDILFSNNQGRNPHNHIHNQVPNPSPTSDPSSSNQNSSSTSSSSGADVLQAVNFCPSCKTAYYFRPNNTAPLQGSFVEIGRISNSRLRNKY NSAKHSNNRGNSNDDQDSSSGDFVISSTINKTLKSSFWQTLRSYAADPPENGPPPPPPPPPAPNGLAVHTPPGPPFAPGVNVVRAASPDGNVAEGDKGGR WGGANLGKDFPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRVYHSSQKGLGAESSGMKPIDDDDNVELEKSNVLLMGPTGSGTNYGLSLVLAVCYLQ EAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESINISRDVSGEGVQQALLKMLEGTIVTVPEKGARKQPRGDNIQIDTKNILFICGG AFIDLEKTVSERRQDSSIGFGAPVRANMRTAGVTNSAVTSSLLEAAESGDLIAYGLIPEFIGRFPILVSLIALTEDQLVRVLTEPRNALGKQYKKLFGMN KVKLHFTEKALGLIARKAMVKNTGARGLRAILESILMESMYEIPDDEQGSNRVVAVVVDEESVGSENKCGCGGKILRGDGALERWLVQYKLKDSPENGEA VEAELQESESEVSTTRAMSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	0	1
AT3G51130			unknown protein		Lus10014270 [exp]	3.2	0.8750
AT3G56680			Single-stranded nucleic acid b...		Lus10043439 [exp]	3.5	0.8363
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10014409 [exp]	4.9	0.8307
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	7.2	0.8396
AT5G11700			unknown protein		Lus10011144 [exp]	8.1	0.8553
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	9.0	0.8418
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	9.2	0.8099
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	12.8	0.8109
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	14.2	0.8362
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	16.3	0.7757

Compare expression of checked genes

Lus10000933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.