Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24130 313 / 5e-105 Pectin lyase-like superfamily protein (.1) AT5G18990 309 / 1e-103 Pectin lyase-like superfamily protein (.1) AT2G47280 239 / 4e-76 Pectin lyase-like superfamily protein (.1) AT2G19150 235 / 1e-74 Pectin lyase-like superfamily protein (.1) AT2G21610 221 / 5e-69 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT2G36710 220 / 3e-68 Pectin lyase-like superfamily protein (.1) AT5G47500 212 / 1e-65 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT1G05310 204 / 3e-62 Pectin lyase-like superfamily protein (.1) AT3G17060 203 / 3e-62 Pectin lyase-like superfamily protein (.1) AT5G26810 201 / 5e-62 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000936 [exp] 511 / 0 AT3G24130 308 / 2e-104 Pectin lyase-like superfamily protein (.1) Lus10007136 [exp] 399 / 7e-139 AT3G24130 348 / 2e-119 Pectin lyase-like superfamily protein (.1) Lus10016678 [exp] 394 / 1e-136 AT3G24130 357 / 3e-123 Pectin lyase-like superfamily protein (.1) Lus10031421 [exp] 239 / 1e-70 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10026347 [exp] 218 / 5e-68 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10010912 [exp] 224 / 5e-65 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10004720 [exp] 207 / 1e-63 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 203 / 3e-61 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10040541 [exp] 200 / 4e-61 AT3G17060 471 / 7e-168 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054700 [exp] 342 / 1e-117 AT3G24130 378 / 2e-132 Pectin lyase-like superfamily protein (.1) Potri.005G012800 [exp] 275 / 1e-90 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.004G033700 [exp] 271 / 6e-89 AT5G18990 298 / 8e-100 Pectin lyase-like superfamily protein (.1) Potri.013G008100 [exp] 225 / 9e-72 AT5G26810 256 / 3e-85 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 222 / 1e-69 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.003G076900 [exp] 215 / 1e-66 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 210 / 3e-64 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 205 / 6e-63 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 200 / 2e-60 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 193 / 2e-58 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10000935 pacid=23172927 polypeptide=Lus10000935 locus=Lus10000935.g ID=Lus10000935.BGIv1.0 annot-version=v1.0 ATGGCGATTAGTACCACTAATTTCCACTTGCTCGTGTGGGTACTACTAACCAGTACCAGTACTCTCTTCTTCGGTACACGCTCGCAACTCGATCGATGGT CCAACGACAACAACAACTACTACTACAAGCTCATGTCGTGGACAAGGCCAGCTACGTCGACAGTGACATTCCCCTACACGCCATCTCGAGTGCAACCAAG TTATTACCGCGATTCGTTGGCGATCAACAAGGCCCGGTCGACAAGGAGTCCTTATAGAGTTGTGGTGGTTGACCAGTCTGGCCATGGCGATTACACTAAG ATTCAGGCTGCTATTGACTCTGTCCCTCAGAATAATCAGCATTGGGTTTGCATCCAAATCAAGGCCGGGACTTATAAGGAGAAAATCACAATTACAGGAG ATAAACCTTACATAATACTGAACGGGCAAGGGATGACATCCACCAAGATTGAGTGGGATGATCACGATTCCACGTTACAAAGCCCTACTTTCATGTCCCA ACCTGACAACATTGTTGTTCGGGACATCGGTATCGTGAACTCTTATAACTACCCAGATGGTCGTCGGAACCGGATACTGCCGGCGGCTGCCGCGCTGGTG AACGGCGACAAGACAGCTTTCTACCGCTGTGGGTTTTTCGGCGTACAAGACACGTTGTGGGACAATGAAGGGAGGCACTACTTCAAGGATTGCCACATCG AAGGTGCTGTCGATTTCATCTTTGGCCGCGGCCAGTCGATTTACGAGAACTGCGACATTCGAGCGATAGGAGGTGGATTCATCACAGCTCACTCAAGAGA GGCTCCTGACGATCCTAGCGGATTTGTGTTCAAAGGGTGCTCCATCTCGGGTAGCGGTCCAGCCTATTTAGGCAGGCCATGGAGGCAGTATGCTAGAGTG CTCTTCTACAAGTGCAAACTCTCAGATATTGTGGAACCCGGCGGTTGGAATCCTTGGAATGGTGACATGGGAAAAACGACGTTCTCGGAGTACGCGAATT ACGGACCAGGGGCCGATATATCGAAGAGGGTAGCTTTTGAGAAGCTACATCTGCCAGTCGAGATGTGGATCGAGATGACTAGCCTCTCGTACATCAACAA AGATGGTTGGCTTCAACAGCAACCCATTTGA
AA sequence Show only first row Show all	>Lus10000935 pacid=23172927 polypeptide=Lus10000935 locus=Lus10000935.g ID=Lus10000935.BGIv1.0 annot-version=v1.0 MAISTTNFHLLVWVLLTSTSTLFFGTRSQLDRWSNDNNNYYYKLMSWTRPATSTVTFPYTPSRVQPSYYRDSLAINKARSTRSPYRVVVVDQSGHGDYTK IQAAIDSVPQNNQHWVCIQIKAGTYKEKITITGDKPYIILNGQGMTSTKIEWDDHDSTLQSPTFMSQPDNIVVRDIGIVNSYNYPDGRRNRILPAAAALV NGDKTAFYRCGFFGVQDTLWDNEGRHYFKDCHIEGAVDFIFGRGQSIYENCDIRAIGGGFITAHSREAPDDPSGFVFKGCSISGSGPAYLGRPWRQYARV LFYKCKLSDIVEPGGWNPWNGDMGKTTFSEYANYGPGADISKRVAFEKLHLPVEMWIEMTSLSYINKDGWLQQQPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24130			Pectin lyase-like superfamily ...		Lus10000935 [exp]	0	1

Compare expression of checked genes

Lus10000935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.