Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28060 205 / 3e-69 Ribosomal protein S24e family protein (.1) AT3G04920 185 / 2e-61 Ribosomal protein S24e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004123 [exp] 254 / 1e-88 AT5G28060 219 / 5e-75 Ribosomal protein S24e family protein (.1) Lus10015941 [exp] 133 / 2e-41 AT5G28060 132 / 1e-41 Ribosomal protein S24e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087800 [exp] 207 / 3e-70 AT5G28060 223 / 9e-77 Ribosomal protein S24e family protein (.1) Potri.008G152500 [exp] 207 / 3e-70 AT5G28060 221 / 1e-75 Ribosomal protein S24e family protein (.1) Potri.005G049400 [exp] 207 / 4e-70 AT5G28060 222 / 3e-76 Ribosomal protein S24e family protein (.1) Potri.013G036100 [exp] 205 / 2e-69 AT5G28060 225 / 1e-77 Ribosomal protein S24e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01282 [flax] [poplar] Ribosomal_S24e Ribosomal protein S24e
Representative CDS sequence Show only first row Show all	>Lus10000938 pacid=23172921 polypeptide=Lus10000938 locus=Lus10000938.g ID=Lus10000938.BGIv1.0 annot-version=v1.0 ATGGTGTCGGAGAAGCTCGGTTCTGGGATCACCATCCGCACCCGCAAGTTCATGACCAACCGTCTCCTCTCCAGGAAGCAGTTCGTCATTGAGGTTCTCC ATCCAGGAAAGGCCAATGTTCCCAAGGCTGAAATCAAGGCTATGTTGGCGACGTTGTATTCTGTCAGGGATGAAAATGCTATCTTTGTGTTCAAGTTCAG GACTCACTTTGGAGGTGGGAAGTCTACTGGCTTTGGGCTGATTTATGATTCTGTTGAGAATGCCAAGAAGTTCGAGCCTAAGTACAGACTAATCAGGAAT GGACTTGATACCAAGGTTGAGAAGTCTAGGAAGCAGATGAAGGAACGTAAGAACAGGTCGAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCTGGAGATG CTGCCAAGGGTGGAAAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10000938 pacid=23172921 polypeptide=Lus10000938 locus=Lus10000938.g ID=Lus10000938.BGIv1.0 annot-version=v1.0 MVSEKLGSGITIRTRKFMTNRLLSRKQFVIEVLHPGKANVPKAEIKAMLATLYSVRDENAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRN GLDTKVEKSRKQMKERKNRSKKIRGVKKTKAGDAAKGGKKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28060			Ribosomal protein S24e family ...		Lus10000938 [exp]	0	1
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	2.0	0.9629
AT3G16780			Ribosomal protein L19e family ...		Lus10038417 [exp]	2.6	0.9493
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	3.2	0.9615
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10012839 [exp]	5.0	0.9514
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	6.2	0.9410
AT1G48830			Ribosomal protein S7e family p...		Lus10034909 [exp]	6.9	0.9543
AT1G26880			Ribosomal protein L34e superfa...		Lus10012829 [exp]	7.1	0.9462
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	7.9	0.9583
AT1G07770		RPS15A	ribosomal protein S15A (.1.2)		Lus10032503 [exp]	9.2	0.9379
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	11.0	0.9496

Compare expression of checked genes

Lus10000938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.