Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32640 1056 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT3G44340 1047 / 0 CEF clone eighty-four (.1.2) AT3G07100 340 / 2e-100 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT2G27460 72 / 2e-12 sec23/sec24 transport family protein (.1) AT1G05520 47 / 7e-05 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004122 [exp] 1463 / 0 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10016597 [exp] 358 / 3e-107 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10004866 [exp] 82 / 1e-15 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10020622 [exp] 79 / 2e-14 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10013100 [exp] 45 / 4e-05 AT3G07100 220 / 5e-67 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035800 [exp] 1206 / 0 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 1197 / 0 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.010G211100 [exp] 389 / 3e-118 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.008G049700 [exp] 386 / 6e-117 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.004G201800 [exp] 73 / 8e-13 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.009G163300 [exp] 72 / 1e-12 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.002G082900 [exp] 51 / 2e-06 AT4G32640 51 / 6e-07 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 52 / 3e-06 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10000939 pacid=23172920 polypeptide=Lus10000939 locus=Lus10000939.g ID=Lus10000939.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCTGTGCCTCCAGGGGCACCTAGGCAACAGCCACCAACGGGACCGCCGAATTACCAGCAGAATCCGAATGCTCTAGCTGACAATTTCCAGA ACATGAACCTTAATCGTCCCAGGGGGCCGCCATTCGGTCAGCCCCCTCCATTTTCAACTGCCGGTTCCGCATCCCCGATGAACCGTCCTGGTCCATTTCC ACCCGGTGGTGCGAGTCCCAGGCCTGCTTCGGGGACTCCATCCTCTACGCCGCTGCCGAATATGGCTCCTGGAAGACCTAGTGGACCGCCTTTCGGCCAG GCACCTCCGTTTGGTGCCAGACCGCCTCCTCCTGGTGCATTTCCAACTTCGATGGCACCGTCTGCTGGGTCTCCTCCTTATGGAGGAGCTCCACCTCCTG GCGCTCGTCCATCTCCAGTTGGCTCCTCGTCGCCTATGGCCATGGGACCTCCTGGTGCTTCAGGTGGTTTTATGAGTAATGGGCCACCTGCTCTGGGATT TCAAGGTGGTCAACAGTTTCCTGGGCTGGCTGGTGGTCAGCAACAACCCTCTATGGGTCCTCCTCCGGCCATGGGGCTTCCAGGGCGTGGTCTTCCTCAA GCGGGTATGCGTCCGTTCATGGGAAGTTCGGGACCTGGTTCATCGCAGGGACCTCCCCCTTCAGCAATGGCTCAAGGGCCACCCAGTTTTGGCGGACCTC CTCAAGGAATGTCAACTCCCGTTGCTTCTCCTTTTGCACCACAGATGCAATCACAAACAGGGATGCCTACGATGCCGGGGTCTATGCCACCACCTAGAAT GTACGGAATGCCACCACCGATGCAAAATCAAATGACTGCTATCTCACCTGTTATGGGTCAAACTGGAGGTGCACAGACAGGGGCGTCAAAGATTGATCCC AATCAAATTCCAAGGCCCATCCCTAGTTCCTCTGTCATCTTGCATGATACTCGACAGCGAAATCAGGCCAACCCACCTCCGCCTGTAACAAGTGACTACA TTGTTCGGGATACTGGAAATTGCAGTCCACGCTACATGAGGTGCACCATCAATCAGATTCCATGCACTGCTGATCTTTTGACGACTTCTGGTATGCAATT AGCCTTGCTGGTCCAACCTTTAGCTCTTCCTCATCCATCTGAGGAGCCTATCCAGATTGTGGATTTTGGAGAAAGTGGCCCAGTTCGCTGTTCTCGTTGC AAAGGCTATATAAACCCTTTCATGAAGTTCATTGATCAGGGAAGACGTTTCATCTGTAATTTCTGTGGTTTTTCTGATGAAACACCCAACGACTACCATT GCAATTTAGGTCCTGACGGTAGACGTAGAGATGCAGATGAAAGACCTGAATTGTGCAGGGGGACAGTTGAATTTATTGCAACAAAGGAGTACATGGTGCG TGAACCAATGCCAGCTGTTTATTTCTTCCTTATTGATGTGTCGATGAATGCCATTCAAACTGGTGCAACTGCAGCAGCCTGTAGTTCCATTAACAAAGTC ATCTCTGATCTTCCGGAAGGGCCTAGGACAATGGTAGGAATTGCAACGTTTGATTCAACAATCCACTTCTACAATTTGAAACGGGCATTACAGCAGCCAT TAATGCTGATCGTTCCTGACATACAAGATGTTTATACTCCTCTGGAAACTGATGTCATTGTGCCAGCTTCTGAGTGCCGTCAACATTTGGAACTCTTGCT GGAAAGTATTCCAACAATGTTTCAGAATACTAGAACAGTAGAGTCGGCTTTTGGTGCAGCAATCAAGGCAGCCTTCTTAGCAATGAAAAGTACCGGTGGG AAGCTGATGGTATTTCAATCAGGCAAGTTTATGACTACTTTTTTTCACCACAGTTTGATGCTTATTTCTTTTCTTCCGTCCATTGGCCTAGGAGCACTTT CCGCAAGAGAGGCTGAGGGACGAAGCAATATCTCTACTGGGGACAAGGAGGCCCATAAGTTACTCCAGCCTGCTGACAAAGTTCTGAAGGACATGGCAGT TGAATTTGCAGAATATCAGGTTTGTGTTGATCTATTCATCACGACCAAGACGTATGTGGACATTGCTTCTATCTCTGTCATCCCAAAAGTTACTGGAGGA CAGGTCTATTATTATCATCCATTTTCAGTAGTCTCGGATTCTGTGAAGCTGTGTAATGACCTGAGATGGAATGTCACAAGGCCTCAAGGATTCGAGGCAG TCATGCGAGTCCGGTGCAGTCAGGGAATTCAAGTACAAGATTACCATGGAAATTTCTGCAAGCGCATTCCGACGGATGTTGACCTTCCTGGGATTGATTG TGATAAAACTATAATGGTGACTTTAAAGCACGACGACAAGCTACAAGACGGTGCAGAATGTGCTTTCCAGTCTCAGTCCTGCGCATTGAGATCTGTTATG AAATCGTTTTCGTCTATCCCGTCTAATGCTGAAGCTGTCTTCGCAGCGGCACGTGATAGTCCTATCACCCCACCCTTGCTTGTCCGTGATCAAGTGACAC ACTTCTGCACAAACATTCTTCTCGCCTACCGGAAGTTCTGTGCAACAGTGTCATCTTCCGGACAGCTTATCCTTCCAGAAGCACTCAAACTGCTGCCTCT ATACACCCTTGCTTTAATCAAGAGTGCTGGACTAAGAATCGAAGGGAAGATAGACGAGCGTTCTTTCTGGATCAGTTACGTCTCCTCAGTCTCTACTCCT TCAGCAATCCCACTCGTTTATCCAAGGATGATCGCTGTTCATGACCTGGATACCCAGGACTCGAACGGATCTGTTCTTCCTTCTCCGCTTCCGCTTTCTA GTGAACATGTCAGTGATGATGGAATTTATCTGCTGGAGAACGGTCAGGATTGTTTGATCTACATTGGGAACTCAGTCAAACCTGACGTTTTGCAGCAATT GCTTGGCATTTCATCCCCCGATGAAGCAACCCCTCAGGTGTGTGCTGAGTTTGTCCTGCAGCAGTACGATAACCCACTGTCGAAGAAGTTAAACGAAGTG GTAAATGAGATCCGCGGACAGCGGTGTTCCTTCCTCCGGTTAAGGCTCTGCAAGAAGGGAGATTCATCAGGAATGGCGTTCTTCTCGTACCTGATCGAGG ACAAGGTCCCCACCGGCGGTCTCTCTTACGTGGAGTTCCTCGTCCACATCCATCGACAAATCCAGATGAAGATGAATGCTTAG
AA sequence Show only first row Show all	>Lus10000939 pacid=23172920 polypeptide=Lus10000939 locus=Lus10000939.g ID=Lus10000939.BGIv1.0 annot-version=v1.0 MAAPVPPGAPRQQPPTGPPNYQQNPNALADNFQNMNLNRPRGPPFGQPPPFSTAGSASPMNRPGPFPPGGASPRPASGTPSSTPLPNMAPGRPSGPPFGQ APPFGARPPPPGAFPTSMAPSAGSPPYGGAPPPGARPSPVGSSSPMAMGPPGASGGFMSNGPPALGFQGGQQFPGLAGGQQQPSMGPPPAMGLPGRGLPQ AGMRPFMGSSGPGSSQGPPPSAMAQGPPSFGGPPQGMSTPVASPFAPQMQSQTGMPTMPGSMPPPRMYGMPPPMQNQMTAISPVMGQTGGAQTGASKIDP NQIPRPIPSSSVILHDTRQRNQANPPPPVTSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGESGPVRCSRC KGYINPFMKFIDQGRRFICNFCGFSDETPNDYHCNLGPDGRRRDADERPELCRGTVEFIATKEYMVREPMPAVYFFLIDVSMNAIQTGATAAACSSINKV ISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDIQDVYTPLETDVIVPASECRQHLELLLESIPTMFQNTRTVESAFGAAIKAAFLAMKSTGG KLMVFQSGKFMTTFFHHSLMLISFLPSIGLGALSAREAEGRSNISTGDKEAHKLLQPADKVLKDMAVEFAEYQVCVDLFITTKTYVDIASISVIPKVTGG QVYYYHPFSVVSDSVKLCNDLRWNVTRPQGFEAVMRVRCSQGIQVQDYHGNFCKRIPTDVDLPGIDCDKTIMVTLKHDDKLQDGAECAFQSQSCALRSVM KSFSSIPSNAEAVFAAARDSPITPPLLVRDQVTHFCTNILLAYRKFCATVSSSGQLILPEALKLLPLYTLALIKSAGLRIEGKIDERSFWISYVSSVSTP SAIPLVYPRMIAVHDLDTQDSNGSVLPSPLPLSSEHVSDDGIYLLENGQDCLIYIGNSVKPDVLQQLLGISSPDEATPQVCAEFVLQQYDNPLSKKLNEV VNEIRGQRCSFLRLRLCKKGDSSGMAFFSYLIEDKVPTGGLSYVEFLVHIHRQIQMKMNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	1.7	0.9655
AT1G35220			unknown protein		Lus10036487 [exp]	3.5	0.9624
AT1G35220			unknown protein		Lus10010355 [exp]	4.2	0.9553
AT2G25800			Protein of unknown function (D...		Lus10008430 [exp]	5.5	0.9464
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	8.7	0.9486
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	8.8	0.9326
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	9.8	0.9426
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	9.9	0.9421
AT1G79570			Protein kinase superfamily pro...		Lus10031173 [exp]	11.0	0.9255
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	12.0	0.9416

Compare expression of checked genes

Lus10000939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.