Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04930 179 / 5e-52 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2) AT5G28040 174 / 1e-49 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 83 / 2e-17 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 81 / 2e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 81 / 2e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 80 / 3e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 77 / 6e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 77 / 2e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G44810 70 / 3e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 70 / 4e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019007 [exp] 326 / 1e-108 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 312 / 2e-103 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004121 [exp] 214 / 4e-68 AT5G28040 93 / 1e-22 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 91 / 2e-20 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 91 / 9e-20 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 84 / 4e-18 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 84 / 2e-17 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 78 / 2e-15 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 69 / 9e-13 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261700 [exp] 280 / 8e-91 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 191 / 1e-56 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 97 / 4e-22 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 92 / 4e-20 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 80 / 5e-16 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 63 / 1e-10 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 58 / 3e-09 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10000940 pacid=23172930 polypeptide=Lus10000940 locus=Lus10000940.g ID=Lus10000940.BGIv1.0 annot-version=v1.0 ATGGCCGCCGTGCACGACGACGCCGTATACGACCTCGACGACGAGGAGGAATCCTCCTACGACGATGATCTCGAGAACGACGACGTCCTCGCCGTCGAGG AAGAAGAAGACGAGGAGGATCTCAATTCCGTCCCCTCGCCTTCTACACCATCCCCGGCTGCAGTCCCCACGGCTGTTGTCGCCCTACCTGTCGCAGTCCC TTCCGCCTCCCTTGTCACCGTCGCCTCCGCAGCTTCCAACGGCTCCGATCCCCACAAGATCCGCGCCGCTATGGGTATGGTTACGGTTCCGACTCACACT CCGCAGCCGCTGGACAAGTCGAGGCAGCTGTTTCAGCGTCTGTGGACGGACGAGGACGAGATCGAGCTGCTGCAAGGGTTTTATGAGTATACCAGCCAGA GAGGAGGTGGGAGCCACCACGACACGGCGATGTTCTATGATCAGATCAGGTCGAAGCTGCAGCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGCTGAG GAGGTTGAAGAAGAAGTACAGGAACGTTCTGAGCAAGATCGAGTCAGGCAAGGATTTCTCGTTCAAGAGCTCTCACGATCAGGTCACTTTCGAGATCTCG CGGAAGATCTGGAGCAGTACTGGCAAGCTCGCGAGTGTTGAGGACGGGAATTTGGATGAGGAGGAAGGTAACCCTAACCTTAACTCTAACTTTAACCCTA ACCTTAACAATTCTGGTTTCAACGATGGTGGTATGGAGATTAAAGTTGAGGATCAGAAGTCAACTCCCAGGTCAAGGAAGCGACCTAGACCCCGCTCCTT GGCTACTCCTCTCCCTCTCAACAGCCCCTTGGTTCCCCTTTTCTCTCCCAACAGCTACGGGGGCAGCCATGGCAGTGGTGGTGCAGCAGGAGGAGGAAAT GTTGGTGTTAAAATGGAAGATAAGCGTTTCCATAATGATGTTCTTGGTTCGAATAATGAGGTTAACAATGGTAATACTTCTCATAGCAATCTGAGTGTTC CTGGTTTGATTGAGGAGACTGTGAAGAGTTGCTTATCCCCATTGTTCAAGGAGTTGTTGAATAATAACACTACAGCATCCGGTTCCGGGATCGGCGGTAG AGGGATTGGGGGTTTGGCGATGAACGCAATGCCATTGAGTTTCGGTGGAATCGATATGATGGCTGATGAGAAATGGAGGAAGCAGCAGATACTGGAGTTG GAGGTGTACTCAAAACGATTGGAGTTGGTTCAAGACCAGGTCAGATCGCAGCTCGAGGAGTTACGCTCTCTGGGTCGGTAG
AA sequence Show only first row Show all	>Lus10000940 pacid=23172930 polypeptide=Lus10000940 locus=Lus10000940.g ID=Lus10000940.BGIv1.0 annot-version=v1.0 MAAVHDDAVYDLDDEEESSYDDDLENDDVLAVEEEEDEEDLNSVPSPSTPSPAAVPTAVVALPVAVPSASLVTVASAASNGSDPHKIRAAMGMVTVPTHT PQPLDKSRQLFQRLWTDEDEIELLQGFYEYTSQRGGGSHHDTAMFYDQIRSKLQLDFNKNQLVEKLRRLKKKYRNVLSKIESGKDFSFKSSHDQVTFEIS RKIWSSTGKLASVEDGNLDEEEGNPNLNSNFNPNLNNSGFNDGGMEIKVEDQKSTPRSRKRPRPRSLATPLPLNSPLVPLFSPNSYGGSHGSGGAAGGGN VGVKMEDKRFHNDVLGSNNEVNNGNTSHSNLSVPGLIEETVKSCLSPLFKELLNNNTTASGSGIGGRGIGGLAMNAMPLSFGGIDMMADEKWRKQQILEL EVYSKRLELVQDQVRSQLEELRSLGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	0	1
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	1.0	0.9242
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	2.4	0.9095
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	3.2	0.9032
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	3.5	0.9024
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	3.5	0.8872
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	3.5	0.9053
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	4.5	0.8914
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	4.7	0.8693
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	5.3	0.9035
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	5.7	0.8886

Compare expression of checked genes

Lus10000940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.