Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 1036 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT1G75660 486 / 1e-157 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 467 / 3e-150 AtXRN2, XRN2 exoribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004119 [exp] 1277 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 1041 / 0 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 613 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 527 / 2e-172 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 477 / 7e-155 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 427 / 7e-141 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10024327 [exp] 422 / 4e-133 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 399 / 3e-127 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 355 / 7e-108 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 1072 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 1026 / 0 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 645 / 0 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 522 / 2e-170 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 489 / 2e-158 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10000941 pacid=23172923 polypeptide=Lus10000941 locus=Lus10000941.g ID=Lus10000941.BGIv1.0 annot-version=v1.0 ATGGTCGCCTTCCGAGAGGAGGAGTCTCAGAGGGACACCAAAATCGGCGTCGTCAGGCCAGTCGACGTCTCCGGACCTAACCCCAACGGTATGGAGTTCG ATAATTTGTATCTCGACATGAACGGGATCATCCACCCTTGCTTCCACCCCGACGGCAAGCCAGGACCTGCTACTTACGACGATGTGTTGAGGTCGATATT CGATTACATTGATCATATTGTGTCATTGGTTCGGCCGAGGAGGCTTCTCTACATGGCAATAGTAAAGAGGAACCAGCAGCGATCAGGGCGGTTTAGAGCT GCAAAAGATGCGGCAGAAGCGGAAGCCGAAGAAGAAAGATTGAGGAAAGAATTTGAGGCGGAAGGGAAACTATTGCCTCCTAAAGAGAAACGCGAAACGT CGGATTCGAATGTTATTACTCCCGGTACTCCGTTCATGGCGGTACTATCGGTTGCTCTTCAGTACTATATACAGTTTAGGTTGAACCATAACCCTGGGTG GCGGTATTTAAAGGTTCTTCTTTCTGATGCAAATGTTCCTGGCGAAGGAGAGCACAAAATCATGTCGTACATTAGATTGCAACGCAACCTTCCTGGTTTT AATCCTAATACAAGGCATTGTCTTTATGGATTGGATGCTGATTTGATTATGCTAGCATTAGCAACACATGAGATTCATTTTTCAATACTGAGAGAGATGG TAAGCTTTCCTGGACAGCAGGAGAAGTGTTTTCAATGTGGTCAAGCCGGTCATCTTGCTGCTGAATGTCGCAGCAAGGCTGGAGGTGACCCTTTAGAGTG GGACGTGGAAAATGATGTTCCAATTTATAAGAAAAAGTATCAGTTCCTCAACATATGGGTGTTACGGGAATATTTGGAATATGATTTGAGTATTCCAAAT CCTTCTTTTACAATCGATTTTGAGCGCATTGTGGATGATTTTGTATTCCTATGTTTCTTTGTTGGCAATGATTTCCTTCCGCACATGCCGACTTTGGAAA TTAGAGAGGGTGCTATTACATTGCTTATGCATGTTTACCGGAAGGAATTCTCTGAGATGGGTGGCTATCTTACTGATGCGGGTGAGGTTCATCTTGATCG AGTTCAGCATTTTATTCAGTCTGTATCTGTTCATGAAGAGCAGATCTTCCAGAAGAGGACTCGGATACAGCAGTCTATAGAGAATAATGAGAGGATCAAA GCAAGAAGAGACGGCCTAGAGCCACCTCCACCGCCAGCTTCAGACAAGGTAAAACTTGGCGAGTCTGGATACAAAGAACGATATTATGCTGAAAAATTCA ATGCATCAACTCCAGAGGAGTTGAACAAAGTGCGCGAAGATGTAAAGGCCTATGTTGGGTGTGTCGCTACTACTACCAAGGCGTCTGTTCGTGGCAATGG TAAGTTTCAGGGTCAGGGAAGTAAACTACTCTATGCTTCTGGCGGGTGCTATTCGTTTTACCCGTACCATTATGCTCCATTTGCCTCAGACCTTGTGGAT CTTACCGAGTTGGAGATTACATTTTTTCCAGGGGAGCCATTCAAACCCTTCGATCAACTCATGGGAACCCTACCAGCTGCAAGTTCGAATTCATTGCCAA AAGAATACAGAAAACTGATGACAGACCCTTTGTCACCATTACAAACGTTCTTCCCTTCGGACTTTGAGATTGATATGAATGGCAAACGCTTTGCCTGGCA GGGTGTTGCAAAATTACCGTTCATCGACGAGAGGAAATTGTTAACACAGACAAAGAAGCTCGAGAGCACATTAACGGAGGAAGAGGGGGCTCGCAACAGT CGGATGCTTGATTTGCTTTATGTACATCCTATGCATCCATTGGGTCAGCAAATCGTCGCCTATTACCATCATAACTATCACATACCTCCTCACGGACGGT CTTTCTGGGCAGTTGATCCATACGCTAGCGGTGGGACGAACGGGTTTATCGGGTTAAGCGAGAGGAATGTGCACAGAACCTTGGTCCCGTCCCCTGTAAA TGGATTACCGCATATAGAGTACAACCAAGTCTTGAACATCACATATGTTTGTCCCCAAAATCATAGACACGTCTCGGAACCTCCGGTTGGTGTTAAATTT CCAGGGAAGATCGTAAAGGCCACGGATATCAAACCGCTCCCCATACTATGGCATGACGACAATACTGGACGGCGCCAGCAAGGCAGAGAGAGGAATCAAG TTCCCGGAGCAATGGCCGGTCCCCAGCTGGGCGAAGCAGCTCACCGTCTCGTTAAAAACAGCCTCAATATAAGATCGATCAACGGATTCCTCCAACAGCC TCTACTCCCCAACGGTTCTGGCAATCAGTTCTCGAACCACCGAGGCAGAACGCCTGCACCTCACAGCTACGGAAGAGGCTACGCTGACCAGGATCCAAAC TACCGCCACGGACAGCACAACAACCACCACCAACCGGGGCCTAGATATCCTTTCCCATCGAACGGCGGATCTCGACAGAACTTCGGCCAAGACAAATCGC GCTAA
AA sequence Show only first row Show all	>Lus10000941 pacid=23172923 polypeptide=Lus10000941 locus=Lus10000941.g ID=Lus10000941.BGIv1.0 annot-version=v1.0 MVAFREEESQRDTKIGVVRPVDVSGPNPNGMEFDNLYLDMNGIIHPCFHPDGKPGPATYDDVLRSIFDYIDHIVSLVRPRRLLYMAIVKRNQQRSGRFRA AKDAAEAEAEEERLRKEFEAEGKLLPPKEKRETSDSNVITPGTPFMAVLSVALQYYIQFRLNHNPGWRYLKVLLSDANVPGEGEHKIMSYIRLQRNLPGF NPNTRHCLYGLDADLIMLALATHEIHFSILREMVSFPGQQEKCFQCGQAGHLAAECRSKAGGDPLEWDVENDVPIYKKKYQFLNIWVLREYLEYDLSIPN PSFTIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAITLLMHVYRKEFSEMGGYLTDAGEVHLDRVQHFIQSVSVHEEQIFQKRTRIQQSIENNERIK ARRDGLEPPPPPASDKVKLGESGYKERYYAEKFNASTPEELNKVREDVKAYVGCVATTTKASVRGNGKFQGQGSKLLYASGGCYSFYPYHYAPFASDLVD LTELEITFFPGEPFKPFDQLMGTLPAASSNSLPKEYRKLMTDPLSPLQTFFPSDFEIDMNGKRFAWQGVAKLPFIDERKLLTQTKKLESTLTEEEGARNS RMLDLLYVHPMHPLGQQIVAYYHHNYHIPPHGRSFWAVDPYASGGTNGFIGLSERNVHRTLVPSPVNGLPHIEYNQVLNITYVCPQNHRHVSEPPVGVKF PGKIVKATDIKPLPILWHDDNTGRRQQGRERNQVPGAMAGPQLGEAAHRLVKNSLNIRSINGFLQQPLLPNGSGNQFSNHRGRTPAPHSYGRGYADQDPN YRHGQHNNHHQPGPRYPFPSNGGSRQNFGQDKSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10000941 [exp]	0	1
AT4G24100			Protein kinase superfamily pro...		Lus10000878 [exp]	6.0	0.8706
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	6.3	0.8729
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	8.0	0.8666
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	8.1	0.8434
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	11.9	0.8132
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	13.7	0.8490
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10015638 [exp]	14.0	0.8595
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	19.2	0.8621
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	24.3	0.8681
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10034723 [exp]	26.4	0.7731

Compare expression of checked genes

Lus10000941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.