Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27970 2018 / 0 ARM repeat superfamily protein (.1.2) AT3G43300 82 / 4e-15 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT3G60860 57 / 2e-07 SEC7-like guanine nucleotide exchange family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004115 [exp] 799 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10004116 [exp] 338 / 5e-107 AT5G27970 221 / 7e-67 ARM repeat superfamily protein (.1.2) Lus10009803 [exp] 85 / 5e-16 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 84 / 7e-16 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10004117 [exp] 74 / 8e-16 AT5G27970 71 / 5e-16 ARM repeat superfamily protein (.1.2) Lus10009300 [exp] 53 / 3e-06 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035100 [exp] 2323 / 0 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2) Potri.006G216900 [exp] 80 / 2e-14 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.014G070600 [exp] 63 / 2e-09 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 54 / 1e-06 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981)
Representative CDS sequence Show only first row Show all	>Lus10000943 pacid=23172926 polypeptide=Lus10000943 locus=Lus10000943.g ID=Lus10000943.BGIv1.0 annot-version=v1.0 ATGGCTCTCATGGCGGCCCTGGAATCTGACCTCCGGGCGCTGTCCGCCGAAGCTCGGCGCCGGTATCCCGCCGTTAAGGACGGGGCGGAGCATGCGATCT TGAAGCTCCGTACATTGTCTAGTCCCAGTGAAATTGCACATAATGATGACATCCTACGAATATTTTTAGCTGCATGTGAGGTGAAGACTGTCAAGCTTAG TGTAATTGGACTTTCCTGTCTGCAAAAGCTCATATCACATGATGCAGTTGCACCAGCAGCTTTGAAGGACATACTTTCCACTTTGAAAGATCATTCCGAG ATGGCCGACGAGAGTGTTCAACTAAGGACTCTACAGACTCTTTTGATTCTGTTTCAGTCACGTTTACATCCAGAAAAGGAGGAAGATATGGCTCAAGCAC TTTATGTATGTCTTCGGCTTCTTGAGAACAATCGCTCTGACAGTGTAAGAAACACTGCTGCCGCTACCTTCAGGCAGGCAGTTGCATTGGTGTTTGATCA TGTGGTTGATGCCGAGTCTCTACCTGTGGCAAAGTTTGCTTCTGGAGTTCATCTTTCTCGATCGAGTTCAGTTACCGTTGATGTTAACCGGCGTATGAAT CATTCAGAGTCAGCAGGAAACGACTTCTCTGAGAGGTCATCATTGAGGAAAGAAACCCTGACAGATCCTGGAAACATTGGACTACGTTTACTTGAAGACC TGACAGCTCTTGCTGCAGGTGGATCTGCGAATTGGTTACATGTGAATTCACTTCAAAGGATATTTGCTCTTGATATACTTGAGTTCATTTTATCGACTTA TGTGGCTGTTTTCAAGACCCTGGTTCCTTTTGAACAGGTTTTACGTGACCAGATATGTTCACTTTTGATGACTTCACTCCGTACCGATGCCGAGCTTGAA GGAGAAGTGGGGGAGCCTTCGTTCCGGCGGTTGGTTCTGCGTTCGGTTGCTCATATTATTAGGTTGTACAGTACAGCACTTGTTACTGAGACTGAGGTAT TTATTAGCATGCTTGTGAAGGTTATCTTTCTTGATCTACCACTTTGGCATCGCATTCTCGTTCTTGAGATATTGAGGGGTTTCTGCATGGAGGCGAGGAC TTTGAGGATACTATTTCAGAACTTTGATATGCACCCAAAGAACATTAATGTTGTAGAGAGTATGGTTAAAGCACTTGCTCGAGTTGTTTCTAATGTACAG GTTCAAGAAGCAAGTGAGGAGAGCCTTGCAGCTGTTGCAGGGATGTTTAGTAGTAAAGCTAAAGGGGTTGAGTGGATTCTTGATAATGAAGCCTCCAATG CAGCTGTCTTGGTTGCTAGTGAAGCACATCTGATAACATTAGCAATCGAAGGGCTTCTTGGTGTTATTTTTACCATAGCTACTTTGACAGATGAAGCAGT AGACTCTGGCGAGCTTGAATCCCCTAGGTTTGATCACGATCCTGCAGCTGCTTGCACTGGTAGACTGGCAGTTCTCTGTGTCGCAATGGTTGACTCGTTC TGGTTGACTATCCTTGATGCTTTGGCCCTTATTTTGTCAAGGTCACAAGGAGAGGCTATTGTATTGGAAATATTAAAGGGATACCAAGCATTCACTCAGG CATGTGGGATTCTTCATGCCATAGAACCTCTGAACTCTTTTCTTGCATCTCTTTGTAAATTCACCATCAATATCCCCAATGAAGCAGAAAGGAGGAGTCC AGCACAATCTCCGGGGTCAAAACGTTCGGATCAACTAGTTGAACAAAAGGACAGCATAGTTCTTACTCCTAAAAATGTGCAGGCCTTGAGAACTCTCTTC AACGTTTCTCATCGACTGCACAATGTTTTGGGGCCATCATGGGTTTTGGTTTTGGAAACTTTGGCTGCTCTAGATAGAGCAATCCATTCTCCGCATGCTA GCACACAGGAGGTGTCTGCAGCTGTGCCAAAGCTTACAAGAGAATATTCTGGCCAGTATAGTGATTTCAGCATTTTGTCTTCTTTGAACTCACAGCTGTT TGAGAGCTCAGCAATGATGCATATATCTGCAGTCAAATCACTTCTTTCTGCACTGTGCCAACTATCATATCAATGCATGTCCACAGCATCGTTACCAGGC AGCTTCGGACCAGGAATCAGTCAAAAAATCGGAACCATAAGTTTTGCTGTGGAGAGGATGCTGTCCATCGTTTCCAATAATGTTCATAGAGTAGGGCCAC TGTGGGATCAGATTGCAGGTCACTTCTTGGAGCTTGCTGATACCCCTAATCAACATTTAAGAATGATGGCCCTTGATGCATTAGATCGATCGATTACTGC AATTATAGGATCTGAAAGTTTCCAAGATCATGTGTCATCTAGATCCAATGGGGCATCAGACAATATGAAAAGCGATTGTGAGCTAAGAACACTCGAGTGT TCCATCATTTCTCCGATCAGGGTTCTATATTTCAACTCCCAAAGTGGGGATGTCCGTACTGGCTCCTTAAAAATTCTTCTGAATGTGTTGGAGAGAAATG GAGAAAAGCTGTACTACAGTTGGCTCGATATCTTAGAACTGCTGAGGCGTGTTGCTGATTCACCAGAAAAAGAGATCATATCTCTGGGCTTTAAGAGCCT CCGAGTTATAATGAATGATGCGATTACTTCCATACCTGTAGACTGCCTTAATGTATGCATAGATGTCAGTGGAGCGTACAGTGCTCAAAAGACAGCACTG AATATAAGCTTGACATCAGTAGGCCTCTTATGGACGACAGCTGATTTTATTGCCAAGGGGGTTCCGCAAAGGCCAACACAAGACAAGCAAACAAGGACGC CTGACACGCATTCCGTACAGAACCCAATGAAGGGCAAATCAAAAGAAGAAGAGACACCTCCATCACCTGATTCATCGGTTGATGAGGCATGTCGAGAAAA TGTCGGGGAAAGTGATCAATTGCTCTTCTCTATCTTTTTCCCCGCTTTGGATCGTGCATCTCATATGGTAGCTACTTCGTCCAAGGATGAATGGCAGGGG AAAGAACTAGGAACTCGAGGAGGAAAAGCTGTCCATATGCTTATCCATCATAGCCGTAACACAGCTCAAAAACAGTGGGATGAAACACTTGTGCTGGTCC TGGGTGGAATAGCACGTCTTTTACGTTCCTTCTTTCCATTTCTTAGCAGCCTAAAAAATTTCTGGGCAGGATGGGAGTCCTTGCTTTTGTTTGTAAAGAA CAGCACTCTAAGTGGTAGTAAAGACGTTGCCATTGCTGCAATAAATTGTCTACAGACGACAATTATTTCTCATGCTCACAAGGGAAACTTGCCAATGCCT TACCTTATCTCGATTCTTGAAGTTTACGAGCATGTTATGCAAAGACCTTCAAGTTACGGGGGTAATGCGATTAGCAAGGTGAAGCAGGAGGTCATACATG GTCTAGGAGAACTGTATGCACAAGCACATAAGATGTTTGATGATCGCATGTTCTCTCAGGTGCTTGAAATCATAAAGTTGGCTATCAAGCAAGCCATGAT GACCAATGAAAACTTTGAAGCTGAATTTGGTCATATTCCACCTGTGATGCGTACCGTCCTGGAAGTCTTGCCTCTACTACGTCCGAGCGAGCAAATCTCT GGAATGTGGCTAATCCTGCTAAGGGAGATTTTCAAATACCTTCCTAGATCAGATCCCTTACATGATGAAGATGAGGCAGGCATAGGAGAAAATTCTCCAG ACAACCTTGCAAAGAGAAACAGCGAAACCTCGAATGGAGCTGGATCTGGCATCCCGAAACAACTTGAACCTTCATCTCAAAGCTCTGGATCAGCTGTGGC TGCAGTTGGAAACTATTCTTTTGCCGAAAAGCTAGTCCCTGTGCTTGTTGAACTCTTGCTTCAGGCTCCGACAGTTGAGAAGTACATAATTTTTCCGGAG ATAATTCAAAGCCTTGGAAGATGCATGACGACGAGAAGAGACAATCCAGATGGTTCACTATGGCGGGGGGCTGTAGAAGGCTTCAATCGTATTCTCATCG ATGATGTCTGCAAAGACGCTGAGCCCGATTCGAAGGTCACTCGATCAGCCAGGTTGCGTGTGTGGAAAGAAGTAGCAGATGTCTATGAAATATTCTTGCT GGGTTATTGTGGGCGCGCCATCCCTTCCAACTCCGCCTCAGCCGTGGCGCTTGAATCGGACGAGGCGCTCGAGATGGCCTTCTTGAAAGTCTTGGGCGAC AAGATTCTTAAATTGGAGACCGATGCACCCGTTGACATTCTACAACGGCTAGTTTCGACAATGGACGGCTGTGCATCCCGCACATGTTCTTTGCCGGTTG AGACGGTGGAACTCATGCCGCCCCATTGTAGCAGATTTTCTCTGCATTGCTTACAGAAAGTATTCGCCTTGAGCAGTTGCGACAACGAAACGACTAGCTG GAACTCTACGAGATCGGAAGTGAGCAAAATCGCGATTACGCTCCTCCTGAGCCGATGCCACTACATATTTAACAGATTTCTAATTGATGAAAAACACTTA GGCGATCGTTCGTTACCGAGAACTAGGCTCGAAGAGATCAAGTACGTGCTTCAAGAGCTCGCTTGCCTCGAAATCCACCCCGAAACAGCTACTGTCCTCC CTTTGCATCCTTACCTGAGAGATGGCTTGGTAGACAAGGAACAACATCAGAAGAGGCGCCCACATTTGCTTGTTATATTCCCATCGTTATGTGAGCTCAT TATGACACGGGAAACGAAAGTTCGAGACTGCGTTCAAGTTCTGCTAAGACTCGTCTCCAAAGAACTCGGCCTTGAAAAGGAGGAACGACTGATGTAG
AA sequence Show only first row Show all	>Lus10000943 pacid=23172926 polypeptide=Lus10000943 locus=Lus10000943.g ID=Lus10000943.BGIv1.0 annot-version=v1.0 MALMAALESDLRALSAEARRRYPAVKDGAEHAILKLRTLSSPSEIAHNDDILRIFLAACEVKTVKLSVIGLSCLQKLISHDAVAPAALKDILSTLKDHSE MADESVQLRTLQTLLILFQSRLHPEKEEDMAQALYVCLRLLENNRSDSVRNTAAATFRQAVALVFDHVVDAESLPVAKFASGVHLSRSSSVTVDVNRRMN HSESAGNDFSERSSLRKETLTDPGNIGLRLLEDLTALAAGGSANWLHVNSLQRIFALDILEFILSTYVAVFKTLVPFEQVLRDQICSLLMTSLRTDAELE GEVGEPSFRRLVLRSVAHIIRLYSTALVTETEVFISMLVKVIFLDLPLWHRILVLEILRGFCMEARTLRILFQNFDMHPKNINVVESMVKALARVVSNVQ VQEASEESLAAVAGMFSSKAKGVEWILDNEASNAAVLVASEAHLITLAIEGLLGVIFTIATLTDEAVDSGELESPRFDHDPAAACTGRLAVLCVAMVDSF WLTILDALALILSRSQGEAIVLEILKGYQAFTQACGILHAIEPLNSFLASLCKFTINIPNEAERRSPAQSPGSKRSDQLVEQKDSIVLTPKNVQALRTLF NVSHRLHNVLGPSWVLVLETLAALDRAIHSPHASTQEVSAAVPKLTREYSGQYSDFSILSSLNSQLFESSAMMHISAVKSLLSALCQLSYQCMSTASLPG SFGPGISQKIGTISFAVERMLSIVSNNVHRVGPLWDQIAGHFLELADTPNQHLRMMALDALDRSITAIIGSESFQDHVSSRSNGASDNMKSDCELRTLEC SIISPIRVLYFNSQSGDVRTGSLKILLNVLERNGEKLYYSWLDILELLRRVADSPEKEIISLGFKSLRVIMNDAITSIPVDCLNVCIDVSGAYSAQKTAL NISLTSVGLLWTTADFIAKGVPQRPTQDKQTRTPDTHSVQNPMKGKSKEEETPPSPDSSVDEACRENVGESDQLLFSIFFPALDRASHMVATSSKDEWQG KELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLSSLKNFWAGWESLLLFVKNSTLSGSKDVAIAAINCLQTTIISHAHKGNLPMP YLISILEVYEHVMQRPSSYGGNAISKVKQEVIHGLGELYAQAHKMFDDRMFSQVLEIIKLAIKQAMMTNENFEAEFGHIPPVMRTVLEVLPLLRPSEQIS GMWLILLREIFKYLPRSDPLHDEDEAGIGENSPDNLAKRNSETSNGAGSGIPKQLEPSSQSSGSAVAAVGNYSFAEKLVPVLVELLLQAPTVEKYIIFPE IIQSLGRCMTTRRDNPDGSLWRGAVEGFNRILIDDVCKDAEPDSKVTRSARLRVWKEVADVYEIFLLGYCGRAIPSNSASAVALESDEALEMAFLKVLGD KILKLETDAPVDILQRLVSTMDGCASRTCSLPVETVELMPPHCSRFSLHCLQKVFALSSCDNETTSWNSTRSEVSKIAITLLLSRCHYIFNRFLIDEKHL GDRSLPRTRLEEIKYVLQELACLEIHPETATVLPLHPYLRDGLVDKEQHQKRRPHLLVIFPSLCELIMTRETKVRDCVQVLLRLVSKELGLEKEERLM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	0	1
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	4.8	0.9410
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	5.0	0.9090
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	6.0	0.8888
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	6.6	0.9399
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	7.1	0.9398
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	7.5	0.8737
AT4G39420			unknown protein		Lus10005786 [exp]	7.7	0.9379
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	8.0	0.9275
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	8.5	0.9337
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	9.5	0.9322

Compare expression of checked genes

Lus10000943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.