Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39550 74 / 2e-16 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT5G12210 45 / 2e-06 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2) AT3G12070 43 / 1e-05 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT5G40280 39 / 0.0005 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017310 [exp] 86 / 3e-22 AT2G39550 86 / 4e-23 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10040303 [exp] 68 / 2e-14 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 47 / 8e-07 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10019318 [exp] 44 / 7e-06 AT2G39550 49 / 7e-07 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10017309 [exp] 43 / 1e-05 AT1G64600 635 / 0.0 methyltransferases;copper ion binding (.1) Lus10018502 [exp] 42 / 2e-05 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10039714 [exp] 42 / 3e-05 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054500 [exp] 76 / 4e-17 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.010G206001 [exp] 66 / 4e-14 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.013G012500 [exp] 43 / 1e-05 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10000944 pacid=23172918 polypeptide=Lus10000944 locus=Lus10000944.g ID=Lus10000944.BGIv1.0 annot-version=v1.0 ATGCGACTCAATCTTCTGGCGGAGGCAGACGGAGACGACGAGGCATCCTTCTGGAGAGAAGGCACGCTTGGTTGTTTCCGGCAGGAGGTTGACAGGGATG AAGTTGCTAGCTGGGTTTTATCACTCAGAGCTCAACCTTGGGATGTTACTGCAATTGACAATGCGGCCATCTGTTACATGTCGGATGACTGGAGTGGGAT GGACAAGGATAAAGCCACAGAGTACATCTTAAAATGCAAGGCATACGATGGTGGCTTTGGGATGACTCCAGGTGCAGAATCCCATGGGGTAGCTCAGACA GCCTTCCAATTTCTTATTCTCTTCACCAGTCACTCTCTAGTTTACCTGAGCTATAGCATCTATGGGTAG
AA sequence Show only first row Show all	>Lus10000944 pacid=23172918 polypeptide=Lus10000944 locus=Lus10000944.g ID=Lus10000944.BGIv1.0 annot-version=v1.0 MRLNLLAEADGDDEASFWREGTLGCFRQEVDRDEVASWVLSLRAQPWDVTAIDNAAICYMSDDWSGMDKDKATEYILKCKAYDGGFGMTPGAESHGVAQT AFQFLILFTSHSLVYLSYSIYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10000944 [exp]	0	1
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10008599 [exp]	4.9	0.8068
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	6.9	0.8555
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027353 [exp]	19.9	0.8316
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	24.3	0.8248
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	27.9	0.8366
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10012410 [exp]	30.5	0.8256
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	34.7	0.8316
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	35.1	0.8241
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	36.5	0.8214
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	42.1	0.8170

Compare expression of checked genes

Lus10000944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.