Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 103 / 2e-22 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27180 82 / 5e-16 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44400 77 / 2e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G25510 76 / 8e-14 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44670 74 / 2e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G44510 66 / 5e-11 TAO1 target of AVRB operation1 (.1) AT3G04220 66 / 7e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16920 65 / 1e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 64 / 2e-10 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G51630 64 / 4e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018308 [exp] 785 / 0 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004115 [exp] 665 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10037406 [exp] 647 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 606 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017143 [exp] 567 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 524 / 3e-170 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001788 [exp] 468 / 7e-156 AT1G69550 142 / 2e-34 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10042714 [exp] 471 / 8e-153 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020237 [exp] 399 / 2e-131 AT1G69550 99 / 3e-21 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043600 [exp] 100 / 2e-21 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.012G053200 [exp] 84 / 3e-16 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T005501 [exp] 83 / 4e-16 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.004G088500 [exp] 81 / 2e-15 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 80 / 3e-15 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G070393 [exp] 76 / 4e-14 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G004599 [exp] 74 / 2e-13 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 73 / 5e-13 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 71 / 2e-12 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069600 [exp] 69 / 1e-11 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10000945 pacid=23172924 polypeptide=Lus10000945 locus=Lus10000945.g ID=Lus10000945.BGIv1.0 annot-version=v1.0 ATGTCTATCCAAGCACAGCAGGTATGGTCTAGCATGGATGTCATGAACATGCTGACAAATGGGGAGGCAACTGATGGAGTCGAAATGCTTAGGGTTAGGA TGCCATGGGGACATGACATTGTGAGCAAGCATTTTGAGAAGTTGTCAAGGTTAAGGTACCTTGACGTGAACGTTGCTGTGCTGCCTGGGGACTTCAGTGA AATACTTCCTCATGTCCGATGGCTTAGGCTGTCTCGTTGCCATGGTTTCCCCTCTGATTTCAACTTGAAGAATGTTGTAATTCTTGAATTGCCAGATTGT GGGGTGACGAACAAGCTGAAAGTAATTAATCTACGTGGCTGCTCTAGGTTTGAAAGAGAGCCCGGCCTTTCCCAATGTGCGAGCCTAGAGTCGATAGATC TGGCTGATTGTGAAGAGGTGAAGGGGGAGCTCAACATCAGTAATTTCAGGAATCTGAAAGTGGTCAGGCTTCAGAAAACTAAAATATCATTAACAGGTGA CATGGGGAAGCTTCAAAAACTCGAAGAGATTAGAACAGGGAAAGTGGCCTGGGGAGCTAAAGAAGAAGTACCTACGCTCCCTACAAGCTTAAAACGCCTA ACCATCTCATCCCCTCGGGTCCCCAATATCCTGGAGCTTATAGACCTGGAGGAGCTATGCTTTGAGAATTGCAGGGAGGCTCCTGAAATTCCTGGGGGTA TATGGCAGCTGACTAAGTTGAAGACTTTGAAGATGGTCAATTGCATTTTCAAAGGTGGCCTACTGCTAAATCCGGATGTCTTCCTCCCATCATCTCTGAC CTGCCTTGTCGTAGAGGGTTTGACTAGGCTGCCGAATCTTGCGAATCTGAGTAATTTGACGGAACTACGACTGATTCACTTCAGTGCAAGTGAAATCCAC GGTCTCGGGAAGTTTAGAGCGCTGGAAGCACTCGAGATATCCGGATCCATGAGTTTGAATCACCTCCATGGCCTTGAGAATCTCGTGCACCTGAAAGAGC TGATCGTGAAAGGTTGTGGACTACAGGATCGTTTTCCCAATCTGTCGAATCTGATCAAGTTGCACAAGCTAGTGATTGTTGAGTGTCTGTCAATCTCCGA AATTCAGGGCCTGGGCGAATTGAAACGGTCTTTGTTACATCTGGAAGTAAGTTGTTTGGACAAGCTAGTCCATATGGATGGCCTTGATTCTCTGGAAGCA CTGGAAAGTTTGGCATTGGAGTCGACTTCACCATCAGACTACGAGGACCTCAATCCACATGAACCATTTCCTGACCTCTCACGTCTGCAAAACCTGAAAC AGCTGTCCATTTGCAGGTGGAGAGGGTTACCCAAGGTCGTTGAATTCAGACAATTAAAATCGTTACAGTCCCTAAAAATGAAGGCCTGCAAGTCTCTTAA GAGGTTAGCTATCCCCTCAAGTCTTCAAAATTTGGAGACGCTTGATCTCAGTGGCTGCATACGGTTGGTTGAAGTCCCGGGCCTTGGCAGATTGGGATCG TTGCAGAGTCTGGACTTGTCCAACTGCCGGTCGCTCGAGGAGTTGCCTAATCTATCCAGTCTGAAGAATTTGGAGGGGTTATCTGTCAGCGATTGCTTTA ACTTGGTTGGGGTTATAGGTCTAGAGAAACTGGAGTCGTTGCTAGTCTTACACATGGCTAATTGCAGGTCGATTAAGGAGTTGCCGGATATGTCCGGTCT CAAGAACCTGACGGGATTAAATCTCAAGGGATGTACAAATCTGAAGAATGTTAAAGGGCTCAAGAAACTGAAGAGGTTGTGTTTTGTGAGTATGGAGAGA AGGTTGCCAGTGAAGCATCCTTTACAAATGGTTGAATGGGCTCGAAAGGAATTGAAATTTACAAGCATTTTTGGTGTAGGCTCAGTTCCTGCAGGAAGTG ACGCTAGAAAATTTTGCTACAGCTTACTGGGATACGCTCTCTAA
AA sequence Show only first row Show all	>Lus10000945 pacid=23172924 polypeptide=Lus10000945 locus=Lus10000945.g ID=Lus10000945.BGIv1.0 annot-version=v1.0 MSIQAQQVWSSMDVMNMLTNGEATDGVEMLRVRMPWGHDIVSKHFEKLSRLRYLDVNVAVLPGDFSEILPHVRWLRLSRCHGFPSDFNLKNVVILELPDC GVTNKLKVINLRGCSRFEREPGLSQCASLESIDLADCEEVKGELNISNFRNLKVVRLQKTKISLTGDMGKLQKLEEIRTGKVAWGAKEEVPTLPTSLKRL TISSPRVPNILELIDLEELCFENCREAPEIPGGIWQLTKLKTLKMVNCIFKGGLLLNPDVFLPSSLTCLVVEGLTRLPNLANLSNLTELRLIHFSASEIH GLGKFRALEALEISGSMSLNHLHGLENLVHLKELIVKGCGLQDRFPNLSNLIKLHKLVIVECLSISEIQGLGELKRSLLHLEVSCLDKLVHMDGLDSLEA LESLALESTSPSDYEDLNPHEPFPDLSRLQNLKQLSICRWRGLPKVVEFRQLKSLQSLKMKACKSLKRLAIPSSLQNLETLDLSGCIRLVEVPGLGRLGS LQSLDLSNCRSLEELPNLSSLKNLEGLSVSDCFNLVGVIGLEKLESLLVLHMANCRSIKELPDMSGLKNLTGLNLKGCTNLKNVKGLKKLKRLCFVSMER RLPVKHPLQMVEWARKELKFTSIFGVGSVPAGSDARKFCYSLLGYAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10000945 [exp]	0	1
AT2G17030			F-box family protein with a do...		Lus10025100 [exp]	6.5	0.7550
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10015624 [exp]	8.8	0.7834
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10025466 [exp]	12.0	0.7734
AT5G13030			unknown protein		Lus10031800 [exp]	18.5	0.6815
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10029363 [exp]	23.9	0.7780
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10033382 [exp]	26.8	0.6890
AT3G58050			unknown protein		Lus10021073 [exp]	30.7	0.7651
AT1G75140			unknown protein		Lus10007163 [exp]	35.1	0.7464
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	37.9	0.7539
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	54.2	0.6778

Compare expression of checked genes

Lus10000945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.