Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37270 372 / 2e-133 ATRPS5B ribosomal protein 5B (.1.2) AT3G11940 371 / 7e-133 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) ATCG00900 57 / 4e-10 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 57 / 4e-10 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013381 [exp] 387 / 1e-138 AT2G37270 370 / 1e-132 ribosomal protein 5B (.1.2) Lus10008436 [exp] 385 / 7e-136 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Lus10004113 [exp] 362 / 1e-127 AT2G37270 339 / 1e-118 ribosomal protein 5B (.1.2) Lus10002394 [exp] 51 / 8e-08 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063200 [exp] 357 / 4e-127 AT2G37270 359 / 4e-128 ribosomal protein 5B (.1.2) Potri.006G197700 [exp] 356 / 1e-126 AT3G11940 358 / 2e-127 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Potri.013G138900 [exp] 56 / 1e-09 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.004G140500 [exp] 44 / 2e-05 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00177 [flax] [poplar] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Lus10000946 pacid=23172925 polypeptide=Lus10000946 locus=Lus10000946.g ID=Lus10000946.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTGGCTCCTGCTCCAGTTCCCATTGCAGCTCCCGCTCCGGCTTCGGCTACGACAGAAGTCAAGCTCTTCAATCGCTGGTCATTTGATGAAA TCTCGATCGGCGACATTTCTTTGTCTGATTATATCGGAGTGCAAGCAGCCAAGCATGCTACCTTTGTGCCCCACACAGCTGGGAGGTACTCGGCCAAGCG ATTCAGGAAGGCCCAATGCCCGATTGTTGAGAGACTGACCAACTCCCTCATGATGCACGGGAGGAACAATGGTAAGAAGCTGATGGCTGTGAGGATCGTG AAACACGCCATGGAGATCATCCATCTCCTTACTGATCTCAACCCGATCCAAGTCATCGTTGATGCTGTTATCAACAGTGGTCCTAGGGAAGATGCCACCA GAATCGGCTCAGCCGGTGTGGTGAGGCGTCAGGCTGTTGATATTTCCCCCCTGAGGCGGGTCAACTCGGCCTTGTACCTCTTGACCACCGGAGCCCGCGA GTCTGCTTTCCGTAACATCAAGACCATCGCCGAATGCTTGGCTGACGAACTCATCAACGCCGCTAAGGGTTCCTCCAACAGCTATGCTATCAAGAAGAAG GATGAGATTGAGAGAGTCGCCAAGGCTAATCGTTAA
AA sequence Show only first row Show all	>Lus10000946 pacid=23172925 polypeptide=Lus10000946 locus=Lus10000946.g ID=Lus10000946.BGIv1.0 annot-version=v1.0 MAEVAPAPVPIAAPAPASATTEVKLFNRWSFDEISIGDISLSDYIGVQAAKHATFVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV KHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNSALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKK DEIERVAKANR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	0	1
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	1.7	0.9778
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	1.7	0.9786
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	2.0	0.9761
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031704 [exp]	2.4	0.9722
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	2.8	0.9780
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030595 [exp]	3.2	0.9751
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	5.1	0.9652
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	7.1	0.9685
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10038665 [exp]	7.2	0.9407
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	8.5	0.9616

Compare expression of checked genes

Lus10000946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.