Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13820 394 / 3e-128 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G12560 382 / 3e-124 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT1G07540 293 / 5e-90 MYB TRFL2 TRF-like 2 (.1) AT3G46590 269 / 2e-81 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G59430 238 / 1e-69 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 134 / 3e-34 MYB TRFL4 TRF-like 4 (.1) AT2G37025 45 / 0.0001 TRFL8 TRF-like 8 (.1.2) AT1G17460 43 / 0.0009 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 43 / 0.001 MYB TRFL6 TRF-like 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002704 [exp] 1166 / 0 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 756 / 0 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 697 / 0 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10016527 [exp] 280 / 8e-85 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040795 [exp] 278 / 3e-84 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10024385 [exp] 244 / 5e-71 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 239 / 3e-69 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10013809 [exp] 44 / 5e-05 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 44 / 0.0003 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202400 [exp] 664 / 0 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 646 / 0 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.001G241600 [exp] 419 / 5e-137 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.009G032000 [exp] 415 / 1e-135 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.006G086500 [exp] 286 / 8e-87 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.003G063700 [exp] 47 / 5e-05 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G126300 [exp] 45 / 0.0002 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.001G170200 [exp] 43 / 0.0008 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000947 pacid=23168452 polypeptide=Lus10000947 locus=Lus10000947.g ID=Lus10000947.BGIv1.0 annot-version=v1.0 ATGGTGTTGAAGAAGAAGCAGCAATATCATGGTTTCAACGGTTTCTACTTTCCTTCTGTCCCCAAGGCACCCAGATCTGCTAGAAGGAGTTTCCATAAGA GGATAGTCGAGGATAGTCAAATATGCGCATTTGAGTTACTTGCTTCTTTAGCGGGAAAGCTATTGCAAGAAAGTGAAAGCTCATCTGCGTCTAGTAATGC ATCCGATGCAAATGACCGGCCTGCAATTTGTGATGACAATGTCAAACGAGAGCAGGTTGAGAAAAGGCCTGTGAAGGGAGAATGCTTTGATCTGGGAAGC TGTGAAGAGAGCACTTACCTCCCTGATTTTGGTTCACCAAACAATGACTGTAAGGGAATTATAAAGGAAATTCCACCATCAGCTGAGAGTGAGCGCTCTT CGATAGTCTCAAATTCTGACTCCTCAGAGAAAGTGAGTAGTGAAGTGAAGCCCATTCAATGTGAGAAGTTGCCTGCCAAAGTCGAGCTAGTCTCTCCTGT CTCCATGGAGCTTTCTAATCGAACTCCAGAAAATGGGTTCAGAAGACAGCCACTGGCTGATGCGCTGGATACTAGAGGGTTGATCCTTGATAATACGTGC AGTTCAAAGGATCTCATGGATTCATGTAGGAAGAATCCGGCTTTGATTGAGTTTGATAACACTGTCAACTTACTGTCAGGCAGGACTTCTCTCCTTCATG CTTCTGATTTGAAGCATGGGGATAAGGTAAGATTAGGTATTAGAGATGATGATGAAAAATTATTTAGGTTTTATAAACAAAGCAACAAGAGAAAGTCGTT CAGGCCTTCTTCAAGAATTGGGGACAGAAGAATAAGAAAGTTGCTGTCATCCAAATACTGGAAAGCAGCTCCTAGATTGAAAGACTATGAACTAACCAAA CCTGCATTTGAAGATGCGGGAATGAAGCCTCTTTATCACAAGAGGAAGTCATATAGCATTCGTGAAAAACATCAGAGTGACATTCTTTACAAACGGAGGA AGTTTTCTGACCATAGCATAGCTTCTGATGGGGTTTTTAGCAGTGAAAGTGTCTGTAATTCACCTGAAAAAGGCATGTCAGGAGACATCTCAGCAGTCCT GCTTCATGGAGAAAATGGCATGCCATCTCCAGCTATTGGTCATCAAGCTCAGCTCAACTCGAAGGATTCTCATGTTAAAGTGAACATCAACTCATTCAAA ATTCCAGAGCTTTTGATTGAGGTCCCAGAAACTGCCACTGTTGGTTCTTTGAAGAGAACTGTTATGGAGGCTGTGACTGCTATACTTGCTGGTGGTTTAC ATGTCGGGGTGCTTCTTCATGGAAAGAAGGTTAGAGATGATACCAGAACACTGTTGCAGACTGGCATCGCTTCTTCACAAAATCCTGATACTCTGGGATT TACATTGGAGCCCAGTTCAGTGCAAGCTAAAGCACCTTTGTGCCCTGAAGGGCCTCCAGCTATCTTACCATGTCATACTTCCCAGCTTATATCAAGGTCC CCGGCTACTACAGTTGTAGGGTTAGAGACTAACGACTCCCCCATTCATCCACCTTCACCAAGAAAACAGGTTGGCAATGATCTGACTAATGAGGAACCAA TTTCTGCTAATACGGACATTGCAGCTGACAAAGCACCGTCAGATTCCCGAGCTCTGGTTGTAGTTGAGCCAATAACTACCGAGCCTCTTAACGTTGTTCC CCTCAACCAGAAATGTAGAAGATCTGAAAATGTACAGCGTCGAACTAGGAGACCATTCTCAGTCTCAGAAGTAGAGGCACTTGTACAGGCAGTTGAAGAA CTGGGCACTGGAAGGTGGCGTGATGTTAAGTTACGATCCTTTGACAATGCTGACCATCGAACATATGTAGACTTGAAGGATAAATGGAAGACATTAGTCC ACACAGCTAAGATAGCTCCACAGCAAAGAAGAGGGGAGCCAGTTCCTCAGAATCTGCTGGACAGAGTGTTGGCTGCTCACGGATACTGGTCAGAGCATCA AGCGAAGCAACAGTGTAAAAGCGAAGCAACCTCAACCTCAACCGTCATGCAGATTTCAGAAGGGCAGGCTGTTTAG
AA sequence Show only first row Show all	>Lus10000947 pacid=23168452 polypeptide=Lus10000947 locus=Lus10000947.g ID=Lus10000947.BGIv1.0 annot-version=v1.0 MVLKKKQQYHGFNGFYFPSVPKAPRSARRSFHKRIVEDSQICAFELLASLAGKLLQESESSSASSNASDANDRPAICDDNVKREQVEKRPVKGECFDLGS CEESTYLPDFGSPNNDCKGIIKEIPPSAESERSSIVSNSDSSEKVSSEVKPIQCEKLPAKVELVSPVSMELSNRTPENGFRRQPLADALDTRGLILDNTC SSKDLMDSCRKNPALIEFDNTVNLLSGRTSLLHASDLKHGDKVRLGIRDDDEKLFRFYKQSNKRKSFRPSSRIGDRRIRKLLSSKYWKAAPRLKDYELTK PAFEDAGMKPLYHKRKSYSIREKHQSDILYKRRKFSDHSIASDGVFSSESVCNSPEKGMSGDISAVLLHGENGMPSPAIGHQAQLNSKDSHVKVNINSFK IPELLIEVPETATVGSLKRTVMEAVTAILAGGLHVGVLLHGKKVRDDTRTLLQTGIASSQNPDTLGFTLEPSSVQAKAPLCPEGPPAILPCHTSQLISRS PATTVVGLETNDSPIHPPSPRKQVGNDLTNEEPISANTDIAADKAPSDSRALVVVEPITTEPLNVVPLNQKCRRSENVQRRTRRPFSVSEVEALVQAVEE LGTGRWRDVKLRSFDNADHRTYVDLKDKWKTLVHTAKIAPQQRRGEPVPQNLLDRVLAAHGYWSEHQAKQQCKSEATSTSTVMQISEGQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10000947 [exp]	0	1
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031460 [exp]	6.3	0.8344
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	8.9	0.8283
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	9.9	0.8384
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	12.1	0.8501
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	16.6	0.8162
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	18.7	0.8154
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	22.4	0.8354
AT4G40050			Protein of unknown function (D...		Lus10023156 [exp]	23.0	0.7707
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	26.1	0.7873
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	29.5	0.8229

Compare expression of checked genes

Lus10000947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.