Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12550 174 / 3e-51 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT3G48670 172 / 1e-50 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT4G01780 157 / 5e-46 XH/XS domain-containing protein (.1) AT1G13790 152 / 1e-42 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT4G00380 137 / 8e-38 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G15910 137 / 1e-37 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT1G80790 125 / 2e-33 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT3G29375 111 / 2e-29 XH domain-containing protein (.1.2) AT5G59390 112 / 5e-29 XH/XS domain-containing protein (.1) AT4G01180 99 / 3e-24 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002703 [exp] 346 / 1e-115 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 228 / 1e-71 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 228 / 1e-71 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000950 [exp] 172 / 1e-51 AT3G12550 159 / 3e-42 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10009217 [exp] 162 / 6e-47 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037986 [exp] 162 / 7e-47 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10040287 [exp] 143 / 3e-41 AT1G15910 164 / 4e-45 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 135 / 4e-37 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10040288 [exp] 127 / 2e-35 AT1G15910 185 / 5e-53 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 222 / 2e-68 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 180 / 3e-53 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 146 / 3e-41 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03469 [flax] [poplar] XH XH domain
Representative CDS sequence Show only first row Show all	>Lus10000948 pacid=23168454 polypeptide=Lus10000948 locus=Lus10000948.g ID=Lus10000948.BGIv1.0 annot-version=v1.0 ATGGAAGTCATAATGAAATGGTCGAAAGAAAAGGACTACGAACTTGACAGCTTAGAAACACTGAACCACAGTCTCATCGTTAGGGAGCGCGAGACCAATG ATCAGTTGCAAGATGCCCGTAAGGAGTTGGCTGATTTTTTGAAAGAAATGCCAACCCACAGTAATATACATGTTAAGCGTATGGGGGAGCTGAATCAAAA GCCATTCCTGAAAGCAATGATGAAAAAGTACAACATGGAAGATGCCGAAGCCAAGGCTTCAGAACTTTGTTCACTATGGGTAGAATATCTGAAAGATCCA GATTGGCATCCATTTAAAGTTGTTATGGCCGACGATGGCAAGCATAAGGAAGTAATTGATGAAAAAGACGAAAGATTAAAAGAACTGAAAGATGAGATTG GTGAGGAAGCGTATGAAGCAGTGGCATCAGCTCTGACTGACATCAATGACTATAACCCCAGTGGAAGATACATTGTCTCAGAGCTGTGGAACAAGAAAGA ATCTAGAAAGGCCTCCTTGCAGGAAGGAGTCGCTTCCTTGTTGGATTTACTGGAGCAAGTGAAGGGATCACTTTGA
AA sequence Show only first row Show all	>Lus10000948 pacid=23168454 polypeptide=Lus10000948 locus=Lus10000948.g ID=Lus10000948.BGIv1.0 annot-version=v1.0 MEVIMKWSKEKDYELDSLETLNHSLIVRERETNDQLQDARKELADFLKEMPTHSNIHVKRMGELNQKPFLKAMMKKYNMEDAEAKASELCSLWVEYLKDP DWHPFKVVMADDGKHKEVIDEKDERLKELKDEIGEEAYEAVASALTDINDYNPSGRYIVSELWNKKESRKASLQEGVASLLDLLEQVKGSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	0	1
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10015388 [exp]	1.0	0.9315
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	3.9	0.9206
AT4G27120			unknown protein		Lus10011161 [exp]	6.0	0.9248
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	7.3	0.9142
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	8.8	0.9111
					Lus10021189 [exp]	10.2	0.8994
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	10.6	0.9108
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020809 [exp]	10.7	0.8996
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	10.8	0.9106
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	11.5	0.9081

Compare expression of checked genes

Lus10000948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.